Analysis of interatomic Contacts of Structural Units in PDB entry:
5E1E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E1E entry

There are 4 chains in PDB entry 5E1E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 865GLU 1033
A
 THR 1036LYS 1154
B
 VAL 865GLU 1033
B
 THR 1036LYS 1154
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5E1E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
871 873Right-handed 310
Helix 2
AA2
A
918 931Right-handed alpha
Helix 3
AA3
A
963 971Right-handed alpha
Helix 4
AA4
A
976 997Right-handed alpha
Helix 5
AA5
A
1005 1007Right-handed 310
Helix 6
AA6
A
1044 1048Right-handed 310
Helix 7
AA7
A
1049 1055Right-handed alpha
Helix 8
AA8
A
1060 1076Right-handed alpha
Helix 9
AA9
A
1079 1082Right-handed 310
Helix 10
AB1
A
1083 1093Right-handed alpha
Helix 11
AB2
A
1096 1098Right-handed 310
Helix 12
AB3
A
1099 1110Right-handed alpha
Helix 13
AB4
A
1121 1130Right-handed alpha
Helix 14
AB5
A
1131 1133Right-handed 310
Helix 15
AB6
A
1135 1139Right-handed 310
Helix 16
AB7
A
1141 1154Right-handed alpha
Helix 17
AB8
B
871 873Right-handed 310
Helix 18
AB9
B
918 931Right-handed alpha
Helix 19
AC1
B
963 968Right-handed alpha
Helix 20
AC2
B
969 971Right-handed 310
Helix 21
AC3
B
976 997Right-handed alpha
Helix 22
AC4
B
1005 1007Right-handed 310
Helix 23
AC5
B
1044 1048Right-handed 310
Helix 24
AC6
B
1049 1055Right-handed alpha
Helix 25
AC7
B
1060 1076Right-handed alpha
Helix 26
AC8
B
1079 1082Right-handed 310
Helix 27
AC9
B
1083 1093Right-handed alpha
Helix 28
AD1
B
1096 1098Right-handed 310
Helix 29
AD2
B
1099 1110Right-handed alpha
Helix 30
AD3
B
1121 1130Right-handed alpha
Helix 31
AD4
B
1131 1133Right-handed 310
Helix 32
AD5
B
1135 1139Right-handed 310
Helix 33
AD6
B
1141 1154Right-handed alpha
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There are 8 sheets in PDB entry 5E1E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
875 883first strand
Strand 2
A
887 894anti-parallel
Strand 3
A
903 910anti-parallel
Strand 4
A
953 957anti-parallel
Strand 5
A
940 944anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
999 1000first strand
Strand 2
A
1026 1027anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1009 1013first strand
Strand 2
A
1016 1019anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1034 1036first strand
Strand 2
A
1057 1059anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
875 884first strand
Strand 2
B
887 894anti-parallel
Strand 3
B
903 910anti-parallel
Strand 4
B
952 957anti-parallel
Strand 5
B
940 945anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
999 1000first strand
Strand 2
B
1026 1027anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1009 1013first strand
Strand 2
B
1016 1019anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1034 1036first strand
Strand 2
B
1057 1059anti-parallel
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