Analysis of interatomic Contacts of Structural Units in PDB entry:
5E1R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E1R entry

There are 6 chains in PDB entry 5E1R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 376	GLN 771
B	ARG 375	GLU 769
C	ARG 375	GLN 771
D	ARG 375	GLU 769
E	ASN 377	GLN 771
F	HIS 376	GLN 771

There are 66 helices in PDB entry 5E1R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	382	386	Right-handed 310
Helix 2	AA2	A	410	414	Right-handed 310
Helix 3	AA3	A	515	520	Right-handed 310
Helix 4	AA4	A	521	530	Right-handed alpha
Helix 5	AA5	A	532	542	Right-handed alpha
Helix 6	AA6	A	554	561	Right-handed alpha
Helix 7	AA7	A	585	587	Right-handed 310
Helix 8	AA8	A	606	610	Right-handed 310
Helix 9	AA9	A	732	737	Right-handed 310
Helix 10	AB1	A	738	747	Right-handed alpha
Helix 11	AB2	A	749	758	Right-handed alpha
Helix 12	AB3	B	382	386	Right-handed 310
Helix 13	AB4	B	410	414	Right-handed 310
Helix 14	AB5	B	515	520	Right-handed 310
Helix 15	AB6	B	521	530	Right-handed alpha
Helix 16	AB7	B	532	542	Right-handed alpha
Helix 17	AB8	B	554	561	Right-handed alpha
Helix 18	AB9	B	585	587	Right-handed 310
Helix 19	AC1	B	606	610	Right-handed 310
Helix 20	AC2	B	733	737	Right-handed 310
Helix 21	AC3	B	738	747	Right-handed alpha
Helix 22	AC4	B	749	758	Right-handed alpha
Helix 23	AC5	C	382	386	Right-handed 310
Helix 24	AC6	C	410	414	Right-handed 310
Helix 25	AC7	C	515	520	Right-handed 310
Helix 26	AC8	C	521	530	Right-handed alpha
Helix 27	AC9	C	532	542	Right-handed alpha
Helix 28	AD1	C	554	561	Right-handed alpha
Helix 29	AD2	C	585	587	Right-handed 310
Helix 30	AD3	C	606	610	Right-handed 310
Helix 31	AD4	C	733	737	Right-handed 310
Helix 32	AD5	C	738	747	Right-handed alpha
Helix 33	AD6	C	749	758	Right-handed alpha
Helix 34	AD7	D	382	386	Right-handed 310
Helix 35	AD8	D	410	414	Right-handed 310
Helix 36	AD9	D	515	520	Right-handed 310
Helix 37	AE1	D	521	530	Right-handed alpha
Helix 38	AE2	D	532	542	Right-handed alpha
Helix 39	AE3	D	554	561	Right-handed alpha
Helix 40	AE4	D	585	587	Right-handed 310
Helix 41	AE5	D	606	610	Right-handed 310
Helix 42	AE6	D	733	737	Right-handed 310
Helix 43	AE7	D	738	747	Right-handed alpha
Helix 44	AE8	D	749	758	Right-handed alpha
Helix 45	AE9	E	382	386	Right-handed 310
Helix 46	AF1	E	410	414	Right-handed 310
Helix 47	AF2	E	515	520	Right-handed 310
Helix 48	AF3	E	521	530	Right-handed alpha
Helix 49	AF4	E	532	542	Right-handed alpha
Helix 50	AF5	E	554	561	Right-handed alpha
Helix 51	AF6	E	585	587	Right-handed 310
Helix 52	AF7	E	606	610	Right-handed 310
Helix 53	AF8	E	733	737	Right-handed 310
Helix 54	AF9	E	738	747	Right-handed alpha
Helix 55	AG1	E	749	758	Right-handed alpha
Helix 56	AG2	F	382	386	Right-handed 310
Helix 57	AG3	F	410	414	Right-handed 310
Helix 58	AG4	F	515	519	Right-handed 310
Helix 59	AG5	F	521	530	Right-handed alpha
Helix 60	AG6	F	532	542	Right-handed alpha
Helix 61	AG7	F	554	561	Right-handed alpha
Helix 62	AG8	F	585	587	Right-handed 310
Helix 63	AG9	F	606	610	Right-handed 310
Helix 64	AH1	F	733	737	Right-handed 310
Helix 65	AH2	F	738	747	Right-handed alpha
Helix 66	AH3	F	749	758	Right-handed alpha

There are 36 sheets in PDB entry 5E1R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	381	first strand
Strand 2	A	691	694	anti-parallel
Strand 3	A	636	643	anti-parallel
Strand 4	A	710	717	anti-parallel
Strand 5	A	614	621	anti-parallel
Strand 6	A	596	601	anti-parallel
Strand 7	A	589	593	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	388	first strand
Strand 2	A	395	399	anti-parallel
Strand 3	A	417	423	anti-parallel
Strand 4	A	487	495	anti-parallel
Strand 5	A	436	444	anti-parallel
Strand 6	A	466	470	anti-parallel
Strand 7	A	582	583	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	462	first strand
Strand 2	A	447	453	anti-parallel
Strand 3	A	475	480	anti-parallel
Strand 4	A	427	434	anti-parallel
Strand 5	A	504	506	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	462	first strand
Strand 2	A	447	453	anti-parallel
Strand 3	A	475	480	anti-parallel
Strand 4	A	427	434	anti-parallel
Strand 5	A	550	552	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	680	686	first strand
Strand 2	A	646	652	anti-parallel
Strand 3	A	700	704	anti-parallel
Strand 4	A	625	632	anti-parallel
Strand 5	A	724	726	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	680	686	first strand
Strand 2	A	646	652	anti-parallel
Strand 3	A	700	704	anti-parallel
Strand 4	A	625	632	anti-parallel
Strand 5	A	765	767	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	381	first strand
Strand 2	B	691	694	anti-parallel
Strand 3	B	636	643	anti-parallel
Strand 4	B	710	717	anti-parallel
Strand 5	B	614	621	anti-parallel
Strand 6	B	596	601	anti-parallel
Strand 7	B	590	593	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	388	first strand
Strand 2	B	395	399	anti-parallel
Strand 3	B	417	423	anti-parallel
Strand 4	B	487	495	anti-parallel
Strand 5	B	436	444	anti-parallel
Strand 6	B	466	470	anti-parallel
Strand 7	B	582	583	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	462	first strand
Strand 2	B	447	453	anti-parallel
Strand 3	B	475	480	anti-parallel
Strand 4	B	427	434	anti-parallel
Strand 5	B	504	505	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	462	first strand
Strand 2	B	447	453	anti-parallel
Strand 3	B	475	480	anti-parallel
Strand 4	B	427	434	anti-parallel
Strand 5	B	550	552	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	680	686	first strand
Strand 2	B	646	652	anti-parallel
Strand 3	B	700	704	anti-parallel
Strand 4	B	625	632	anti-parallel
Strand 5	B	724	726	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	680	686	first strand
Strand 2	B	646	652	anti-parallel
Strand 3	B	700	704	anti-parallel
Strand 4	B	625	632	anti-parallel
Strand 5	B	765	767	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	381	first strand
Strand 2	C	691	694	anti-parallel
Strand 3	C	636	643	anti-parallel
Strand 4	C	710	717	anti-parallel
Strand 5	C	614	621	anti-parallel
Strand 6	C	596	601	anti-parallel
Strand 7	C	589	593	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	388	first strand
Strand 2	C	395	399	anti-parallel
Strand 3	C	417	423	anti-parallel
Strand 4	C	487	495	anti-parallel
Strand 5	C	436	444	anti-parallel
Strand 6	C	466	470	anti-parallel
Strand 7	C	582	583	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	462	first strand
Strand 2	C	447	453	anti-parallel
Strand 3	C	475	480	anti-parallel
Strand 4	C	427	434	anti-parallel
Strand 5	C	504	506	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	462	first strand
Strand 2	C	447	453	anti-parallel
Strand 3	C	475	480	anti-parallel
Strand 4	C	427	434	anti-parallel
Strand 5	C	550	552	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	680	686	first strand
Strand 2	C	646	652	anti-parallel
Strand 3	C	700	704	anti-parallel
Strand 4	C	625	632	anti-parallel
Strand 5	C	724	726	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	680	686	first strand
Strand 2	C	646	652	anti-parallel
Strand 3	C	700	704	anti-parallel
Strand 4	C	625	632	anti-parallel
Strand 5	C	765	767	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	381	first strand
Strand 2	D	691	694	anti-parallel
Strand 3	D	636	644	anti-parallel
Strand 4	D	710	717	anti-parallel
Strand 5	D	614	621	anti-parallel
Strand 6	D	596	601	anti-parallel
Strand 7	D	589	593	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	387	388	first strand
Strand 2	D	395	399	anti-parallel
Strand 3	D	417	423	anti-parallel
Strand 4	D	487	495	anti-parallel
Strand 5	D	436	444	anti-parallel
Strand 6	D	466	470	anti-parallel
Strand 7	D	582	583	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	456	462	first strand
Strand 2	D	447	453	anti-parallel
Strand 3	D	475	480	anti-parallel
Strand 4	D	427	434	anti-parallel
Strand 5	D	504	506	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	456	462	first strand
Strand 2	D	447	453	anti-parallel
Strand 3	D	475	480	anti-parallel
Strand 4	D	427	434	anti-parallel
Strand 5	D	550	552	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	680	686	first strand
Strand 2	D	646	652	anti-parallel
Strand 3	D	700	704	anti-parallel
Strand 4	D	625	632	anti-parallel
Strand 5	D	724	726	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	680	686	first strand
Strand 2	D	646	652	anti-parallel
Strand 3	D	700	704	anti-parallel
Strand 4	D	625	632	anti-parallel
Strand 5	D	765	767	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	380	381	first strand
Strand 2	E	691	694	anti-parallel
Strand 3	E	636	643	anti-parallel
Strand 4	E	710	717	anti-parallel
Strand 5	E	614	621	anti-parallel
Strand 6	E	596	601	anti-parallel
Strand 7	E	589	593	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	387	388	first strand
Strand 2	E	395	399	anti-parallel
Strand 3	E	417	423	anti-parallel
Strand 4	E	487	495	anti-parallel
Strand 5	E	436	444	anti-parallel
Strand 6	E	466	470	anti-parallel
Strand 7	E	582	583	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	456	463	first strand
Strand 2	E	446	453	anti-parallel
Strand 3	E	475	480	anti-parallel
Strand 4	E	427	434	anti-parallel
Strand 5	E	504	506	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	456	463	first strand
Strand 2	E	446	453	anti-parallel
Strand 3	E	475	480	anti-parallel
Strand 4	E	427	434	anti-parallel
Strand 5	E	550	552	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	680	686	first strand
Strand 2	E	646	652	anti-parallel
Strand 3	E	700	704	anti-parallel
Strand 4	E	625	632	anti-parallel
Strand 5	E	724	726	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	680	686	first strand
Strand 2	E	646	652	anti-parallel
Strand 3	E	700	704	anti-parallel
Strand 4	E	625	632	anti-parallel
Strand 5	E	765	767	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	380	381	first strand
Strand 2	F	691	694	anti-parallel
Strand 3	F	636	643	anti-parallel
Strand 4	F	710	717	anti-parallel
Strand 5	F	614	621	anti-parallel
Strand 6	F	596	601	anti-parallel
Strand 7	F	590	592	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	387	388	first strand
Strand 2	F	395	399	anti-parallel
Strand 3	F	417	423	anti-parallel
Strand 4	F	487	495	anti-parallel
Strand 5	F	436	444	anti-parallel
Strand 6	F	466	470	anti-parallel
Strand 7	F	582	583	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	456	462	first strand
Strand 2	F	447	453	anti-parallel
Strand 3	F	475	480	anti-parallel
Strand 4	F	427	434	anti-parallel
Strand 5	F	504	505	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	456	462	first strand
Strand 2	F	447	453	anti-parallel
Strand 3	F	475	480	anti-parallel
Strand 4	F	427	434	anti-parallel
Strand 5	F	550	552	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	681	686	first strand
Strand 2	F	646	651	anti-parallel
Strand 3	F	699	704	anti-parallel
Strand 4	F	625	632	anti-parallel
Strand 5	F	724	726	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	681	686	first strand
Strand 2	F	646	651	anti-parallel
Strand 3	F	699	704	anti-parallel
Strand 4	F	625	632	anti-parallel
Strand 5	F	765	767	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E1R

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E1R