Analysis of interatomic Contacts of Structural Units in PDB entry:
5E1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E1T entry

There are 3 chains in PDB entry 5E1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 224SER 415
B
 GLN 221THR 414
C
 ARG 226THR 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5E1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
224 263Right-handed alpha
Helix 2
AA2
A
275 284Right-handed alpha
Helix 3
AA3
A
314 318Right-handed 310
Helix 4
AA4
A
333 337Right-handed 310
Helix 5
AA5
A
391 393Right-handed 310
Helix 6
AA6
B
222 263Right-handed alpha
Helix 7
AA7
B
275 285Right-handed alpha
Helix 8
AA8
B
314 318Right-handed 310
Helix 9
AA9
B
333 337Right-handed 310
Helix 10
AB1
B
391 395Right-handed 310
Helix 11
AB2
C
227 263Right-handed alpha
Helix 12
AB3
C
275 285Right-handed alpha
Helix 13
AB4
C
333 337Right-handed 310
Helix 14
AB5
C
368 372Right-handed 310
Helix 15
AB6
C
390 394Right-handed alpha
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There are 10 sheets in PDB entry 5E1T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 274first strand
Strand 2
A
405 412anti-parallel
Strand 3
A
345 350anti-parallel
Strand 4
A
358 362anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 292first strand
Strand 2
A
304 310anti-parallel
Strand 3
A
296 297anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 292first strand
Strand 2
A
304 310anti-parallel
Strand 3
A
321 329anti-parallel
Strand 4
A
382 389anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 274first strand
Strand 2
B
405 412anti-parallel
Strand 3
B
345 349anti-parallel
Strand 4
B
358 362anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 292first strand
Strand 2
B
304 310anti-parallel
Strand 3
B
296 297anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 292first strand
Strand 2
B
304 310anti-parallel
Strand 3
B
321 329anti-parallel
Strand 4
B
382 389anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
268 274first strand
Strand 2
C
405 412anti-parallel
Strand 3
C
345 349anti-parallel
Strand 4
C
358 362anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
268 274first strand
Strand 2
C
405 412anti-parallel
Strand 3
C
401 402anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
291 292first strand
Strand 2
C
304 310anti-parallel
Strand 3
C
296 297anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
291 292first strand
Strand 2
C
304 310anti-parallel
Strand 3
C
321 329anti-parallel
Strand 4
C
382 389anti-parallel
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