Analysis of interatomic Contacts of Structural Units in PDB entry:
5E1V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E1V entry

There are 2 chains in PDB entry 5E1V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASN 6	VAL 279
A	VAL 7	VAL 279

There are 24 helices in PDB entry 5E1V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	20	25	Right-handed alpha
Helix 2	AA2	B	35	37	Right-handed 310
Helix 3	AA3	B	38	50	Right-handed alpha
Helix 4	AA4	B	53	57	Right-handed 310
Helix 5	AA5	B	129	136	Right-handed alpha
Helix 6	AA6	B	143	153	Right-handed alpha
Helix 7	AA7	B	159	162	Right-handed 310
Helix 8	AA8	B	181	186	Right-handed alpha
Helix 9	AA9	B	187	191	Right-handed 310
Helix 10	AB1	B	194	209	Right-handed alpha
Helix 11	AB2	B	209	214	Right-handed alpha
Helix 12	AB3	B	245	247	Right-handed 310
Helix 13	AB4	A	20	25	Right-handed alpha
Helix 14	AB5	A	35	37	Right-handed 310
Helix 15	AB6	A	38	50	Right-handed alpha
Helix 16	AB7	A	53	57	Right-handed 310
Helix 17	AB8	A	130	136	Right-handed alpha
Helix 18	AB9	A	143	153	Right-handed alpha
Helix 19	AC1	A	159	162	Right-handed 310
Helix 20	AC2	A	181	186	Right-handed alpha
Helix 21	AC3	A	187	191	Right-handed 310
Helix 22	AC4	A	194	209	Right-handed alpha
Helix 23	AC5	A	209	214	Right-handed alpha
Helix 24	AC6	A	245	247	Right-handed 310

There are 6 sheets in PDB entry 5E1V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	16	first strand
Strand 2	B	75	86	anti-parallel
Strand 3	B	89	99	anti-parallel
Strand 4	B	109	117	anti-parallel
Strand 5	B	58	64	anti-parallel
Strand 6	B	220	230	anti-parallel
Strand 7	B	267	278	anti-parallel
Strand 8	B	253	261	anti-parallel
Strand 9	B	237	243	anti-parallel
Strand 10	B	173	179	anti-parallel
Strand 11	B	164	170	anti-parallel
Strand 12	B	139	142	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	16	first strand
Strand 2	B	75	86	anti-parallel
Strand 3	B	89	99	anti-parallel
Strand 4	B	109	117	anti-parallel
Strand 5	B	58	64	anti-parallel
Strand 6	B	220	230	anti-parallel
Strand 7	B	267	278	anti-parallel
Strand 8	B	253	261	anti-parallel
Strand 9	B	248	250	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	70	first strand
Strand 2	B	31	34	anti-parallel
Strand 3	B	26	28	anti-parallel
Strand 4	B	155	157	anti-parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	16	first strand
Strand 2	A	75	86	anti-parallel
Strand 3	A	89	99	anti-parallel
Strand 4	A	109	117	anti-parallel
Strand 5	A	58	64	anti-parallel
Strand 6	A	220	230	anti-parallel
Strand 7	A	267	278	anti-parallel
Strand 8	A	253	261	anti-parallel
Strand 9	A	237	243	anti-parallel
Strand 10	A	173	179	anti-parallel
Strand 11	A	164	170	anti-parallel
Strand 12	A	139	142	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	16	first strand
Strand 2	A	75	86	anti-parallel
Strand 3	A	89	99	anti-parallel
Strand 4	A	109	117	anti-parallel
Strand 5	A	58	64	anti-parallel
Strand 6	A	220	230	anti-parallel
Strand 7	A	267	278	anti-parallel
Strand 8	A	253	261	anti-parallel
Strand 9	A	248	250	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	70	first strand
Strand 2	A	31	34	anti-parallel
Strand 3	A	26	28	anti-parallel
Strand 4	A	155	157	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E1V

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E1V