Analysis of interatomic Contacts of Structural Units in PDB entry:
5E24

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E24 entry

There are 6 chains in PDB entry 5E24 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1	LYS 370
B	GLY 232	PRO 269
C	LYS 1	LYS 370
D	GLY 232	PRO 269
E	HIS 99	PRO 522
F	GLU 101	HIS 126

There are 47 helices in PDB entry 5E24. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	32	Right-handed alpha
Helix 2	AA2	A	42	52	Right-handed alpha
Helix 3	AA3	A	66	73	Right-handed alpha
Helix 4	AA4	A	82	87	Right-handed alpha
Helix 5	AA5	A	90	97	Right-handed alpha
Helix 6	AA6	A	128	130	Right-handed 310
Helix 7	AA7	A	131	141	Right-handed alpha
Helix 8	AA8	A	153	164	Right-handed alpha
Helix 9	AA9	A	185	201	Right-handed alpha
Helix 10	AB1	A	209	219	Right-handed alpha
Helix 11	AB2	A	228	230	Right-handed 310
Helix 12	AB3	A	231	237	Right-handed alpha
Helix 13	AB4	A	272	283	Right-handed alpha
Helix 14	AB5	A	286	297	Right-handed alpha
Helix 15	AB6	A	304	312	Right-handed alpha
Helix 16	AB7	A	314	327	Right-handed alpha
Helix 17	AB8	A	335	352	Right-handed alpha
Helix 18	AB9	A	356	370	Right-handed alpha
Helix 19	AC1	C	16	32	Right-handed alpha
Helix 20	AC2	C	42	52	Right-handed alpha
Helix 21	AC3	C	66	73	Right-handed alpha
Helix 22	AC4	C	82	87	Right-handed alpha
Helix 23	AC5	C	90	97	Right-handed alpha
Helix 24	AC6	C	128	130	Right-handed 310
Helix 25	AC7	C	131	141	Right-handed alpha
Helix 26	AC8	C	153	164	Right-handed alpha
Helix 27	AC9	C	185	201	Right-handed alpha
Helix 28	AD1	C	209	219	Right-handed alpha
Helix 29	AD2	C	228	230	Right-handed 310
Helix 30	AD3	C	231	238	Right-handed alpha
Helix 31	AD4	C	272	283	Right-handed alpha
Helix 32	AD5	C	286	297	Right-handed alpha
Helix 33	AD6	C	304	312	Right-handed alpha
Helix 34	AD7	C	314	327	Right-handed alpha
Helix 35	AD8	C	335	352	Right-handed alpha
Helix 36	AD9	C	356	370	Right-handed alpha
Helix 37	AE1	E	106	117	Right-handed alpha
Helix 38	AE2	E	152	164	Right-handed alpha
Helix 39	AE3	E	166	172	Right-handed alpha
Helix 40	AE4	E	247	251	Right-handed 310
Helix 41	AE5	E	397	401	Right-handed 310
Helix 42	AE6	E	482	489	Right-handed 310
Helix 43	AE7	F	106	117	Right-handed alpha
Helix 44	AE8	F	152	164	Right-handed alpha
Helix 45	AE9	F	166	172	Right-handed alpha
Helix 46	AF1	F	397	401	Right-handed 310
Helix 47	AF2	F	482	488	Right-handed 310

There are 28 sheets in PDB entry 5E24. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	7	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	106	111	anti-parallel
Strand 6	A	301	302	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	7	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	328	329	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	102	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	222	227	parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	242	245	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	172	first strand
Strand 2	A	175	182	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	294	299	first strand
Strand 2	F	321	326	anti-parallel
Strand 3	F	336	342	anti-parallel
Strand 4	F	345	347	anti-parallel
Strand 5	F	393	395	anti-parallel
Strand 6	F	385	386	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	294	299	first strand
Strand 2	F	321	326	anti-parallel
Strand 3	F	359	364	first strand
Strand 4	F	402	416	anti-parallel
Strand 5	F	120	127	anti-parallel
Strand 6	F	146	150	anti-parallel
Strand 7	F	196	198	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	294	299	first strand
Strand 2	F	321	326	anti-parallel
Strand 3	F	359	364	first strand
Strand 4	F	402	416	anti-parallel
Strand 5	F	259	266	anti-parallel
Strand 6	F	274	280	anti-parallel
Strand 7	F	283	287	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	294	299	first strand
Strand 2	F	321	326	anti-parallel
Strand 3	F	359	364	first strand
Strand 4	F	402	416	anti-parallel
Strand 5	F	508	520	anti-parallel
Strand 6	B	233	239	anti-parallel
Strand 7	B	242	249	anti-parallel
Strand 8	B	258	260	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	463	464	first strand
Strand 2	F	456	460	anti-parallel
Strand 3	F	498	504	anti-parallel
Strand 4	F	508	520	anti-parallel
Strand 5	B	233	239	anti-parallel
Strand 6	B	242	249	anti-parallel
Strand 7	B	258	260	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	7	10	parallel
Strand 3	C	59	63	parallel
Strand 4	C	258	266	anti-parallel
Strand 5	C	106	111	anti-parallel
Strand 6	C	301	302	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	7	10	parallel
Strand 3	C	59	63	parallel
Strand 4	C	258	266	anti-parallel
Strand 5	C	328	329	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	102	103	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	222	227	parallel
Strand 3	C	114	118	anti-parallel
Strand 4	C	242	245	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	172	first strand
Strand 2	C	175	182	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	294	299	first strand
Strand 2	E	321	326	anti-parallel
Strand 3	E	336	342	anti-parallel
Strand 4	E	345	347	anti-parallel
Strand 5	E	393	395	anti-parallel
Strand 6	E	385	386	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	294	299	first strand
Strand 2	E	321	326	anti-parallel
Strand 3	E	359	364	first strand
Strand 4	E	402	416	anti-parallel
Strand 5	E	120	127	anti-parallel
Strand 6	E	146	150	anti-parallel
Strand 7	E	196	198	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	294	299	first strand
Strand 2	E	321	326	anti-parallel
Strand 3	E	359	364	first strand
Strand 4	E	402	416	anti-parallel
Strand 5	E	259	266	anti-parallel
Strand 6	E	274	280	anti-parallel
Strand 7	E	283	287	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	294	299	first strand
Strand 2	E	321	326	anti-parallel
Strand 3	E	359	364	first strand
Strand 4	E	402	416	anti-parallel
Strand 5	E	508	520	anti-parallel
Strand 6	D	233	239	anti-parallel
Strand 7	D	242	249	anti-parallel
Strand 8	D	258	260	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	463	464	first strand
Strand 2	E	456	460	anti-parallel
Strand 3	E	498	504	anti-parallel
Strand 4	E	508	520	anti-parallel
Strand 5	D	233	239	anti-parallel
Strand 6	D	242	249	anti-parallel
Strand 7	D	258	260	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	131	first strand
Strand 2	E	235	238	parallel
Strand 3	E	212	213	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	189	first strand
Strand 2	E	173	178	anti-parallel
Strand 3	E	216	221	anti-parallel
Strand 4	E	226	231	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	370	375	first strand
Strand 2	E	378	383	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	430	437	first strand
Strand 2	E	444	450	anti-parallel
Strand 3	E	474	477	anti-parallel
Strand 4	E	467	471	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	129	131	first strand
Strand 2	F	235	238	parallel
Strand 3	F	212	213	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	187	189	first strand
Strand 2	F	173	178	anti-parallel
Strand 3	F	216	221	anti-parallel
Strand 4	F	226	231	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	370	375	first strand
Strand 2	F	378	383	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	430	437	first strand
Strand 2	F	444	450	anti-parallel
Strand 3	F	474	477	anti-parallel
Strand 4	F	467	471	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E24

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E24