Analysis of interatomic Contacts of Structural Units in PDB entry:
5E27


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E27 entry

There are 2 chains in PDB entry 5E27 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 137ARG 362
B
 LYS 139ARG 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5E27. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
158 166Right-handed alpha
Helix 2
AA2
A
282 294Right-handed alpha
Helix 3
AA3
A
312 319Right-handed alpha
Helix 4
AA4
A
320 324Right-handed 310
Helix 5
AA5
A
327 331Right-handed 310
Helix 6
AA6
A
332 348Right-handed alpha
Helix 7
AA7
A
352 360Right-handed alpha
Helix 8
AA8
B
158 166Right-handed alpha
Helix 9
AA9
B
281 293Right-handed alpha
Helix 10
AB1
B
312 319Right-handed alpha
Helix 11
AB2
B
320 324Right-handed 310
Helix 12
AB3
B
327 331Right-handed 310
Helix 13
AB4
B
332 342Right-handed alpha
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There are 6 sheets in PDB entry 5E27. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 145first strand
Strand 2
A
188 193parallel
Strand 3
A
175 177anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 206first strand
Strand 2
A
232 243anti-parallel
Strand 3
A
246 259anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 215first strand
Strand 2
A
264 269parallel
Strand 3
A
223 227anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 152first strand
Strand 2
B
141 145anti-parallel
Strand 3
B
189 193parallel
Strand 4
B
175 177anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 206first strand
Strand 2
B
232 243anti-parallel
Strand 3
B
246 259anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 215first strand
Strand 2
B
264 269parallel
Strand 3
B
223 227anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il