Analysis of interatomic Contacts of Structural Units in PDB entry:
5E2E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E2E entry

There are 2 chains in PDB entry 5E2E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6ILE 265
B
 SER 6ILE 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5E2E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 18Right-handed alpha
Helix 2
AA2
A
48 64Right-handed alpha
Helix 3
AA3
A
65 69Right-handed 310
Helix 4
AA4
A
75 79Right-handed 310
Helix 5
AA5
A
83 89Right-handed alpha
Helix 6
AA6
A
96 107Right-handed alpha
Helix 7
AA7
A
108 120Right-handed alpha
Helix 8
AA8
A
121 132Right-handed alpha
Helix 9
AA9
A
144 148Right-handed 310
Helix 10
AB1
A
159 172Right-handed alpha
Helix 11
AB2
A
177 190Right-handed alpha
Helix 12
AB3
A
197 202Right-handed alpha
Helix 13
AB4
A
250 264Right-handed alpha
Helix 14
AB5
B
7 18Right-handed alpha
Helix 15
AB6
B
48 62Right-handed alpha
Helix 16
AB7
B
75 79Right-handed 310
Helix 17
AB8
B
83 89Right-handed alpha
Helix 18
AB9
B
96 106Right-handed alpha
Helix 19
AC1
B
108 120Right-handed alpha
Helix 20
AC2
B
121 132Right-handed alpha
Helix 21
AC3
B
144 148Right-handed 310
Helix 22
AC4
B
159 172Right-handed alpha
Helix 23
AC5
B
177 190Right-handed alpha
Helix 24
AC6
B
197 202Right-handed alpha
Helix 25
AC7
B
250 264Right-handed alpha
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There are 6 sheets in PDB entry 5E2E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
20 28anti-parallel
Strand 3
A
234 242anti-parallel
Strand 4
A
219 227anti-parallel
Strand 5
A
207 215anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
157 158anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
94 95anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 37first strand
Strand 2
B
20 28anti-parallel
Strand 3
B
234 242anti-parallel
Strand 4
B
219 227anti-parallel
Strand 5
B
207 215anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
157 158anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
94 95anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il