Analysis of interatomic Contacts of Structural Units in PDB entry:
5E2F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E2F entry

There are 4 chains in PDB entry 5E2F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 31PHE 78
A
 VAL 80SER 267
B
 HIS 31PHE 78
B
 VAL 80SER 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5E2F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 37Right-handed 310
Helix 2
AA2
A
39 44Right-handed 310
Helix 3
AA3
A
64 69Right-handed alpha
Helix 4
AA4
A
74 76Right-handed 310
Helix 5
AA5
A
77 89Right-handed alpha
Helix 6
AA6
A
108 112Right-handed 310
Helix 7
AA7
A
117 123Right-handed alpha
Helix 8
AA8
A
125 137Right-handed alpha
Helix 9
AA9
A
137 148Right-handed alpha
Helix 10
AB1
A
171 184Right-handed alpha
Helix 11
AB2
A
190 201Right-handed alpha
Helix 12
AB3
A
247 262Right-handed alpha
Helix 13
AB4
B
33 37Right-handed 310
Helix 14
AB5
B
64 69Right-handed alpha
Helix 15
AB6
B
74 77Right-handed 310
Helix 16
AB7
B
78 89Right-handed alpha
Helix 17
AB8
B
108 112Right-handed 310
Helix 18
AB9
B
117 123Right-handed alpha
Helix 19
AC1
B
125 137Right-handed alpha
Helix 20
AC2
B
137 148Right-handed alpha
Helix 21
AC3
B
171 184Right-handed alpha
Helix 22
AC4
B
190 201Right-handed alpha
Helix 23
AC5
B
247 262Right-handed alpha
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There are 4 sheets in PDB entry 5E2F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
48 54anti-parallel
Strand 3
A
236 244anti-parallel
Strand 4
A
225 233anti-parallel
Strand 5
A
209 217anti-parallel
Strand 6
A
202 205anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
115 116anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 63first strand
Strand 2
B
48 54anti-parallel
Strand 3
B
236 244anti-parallel
Strand 4
B
225 233anti-parallel
Strand 5
B
209 217anti-parallel
Strand 6
B
202 205anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 99first strand
Strand 2
B
115 116anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il