Analysis of interatomic Contacts of Structural Units in PDB entry:
5E2G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E2G entry

There are 2 chains in PDB entry 5E2G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1LEU 355
B
 ASN -1LEU 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5E2G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-1 19Right-handed alpha
Helix 2
AA2
A
60 75Right-handed alpha
Helix 3
AA3
A
83 88Right-handed alpha
Helix 4
AA4
A
89 92Right-handed 310
Helix 5
AA5
A
94 99Right-handed 310
Helix 6
AA6
A
100 106Right-handed alpha
Helix 7
AA7
A
122 133Right-handed alpha
Helix 8
AA8
A
146 162Right-handed alpha
Helix 9
AA9
A
164 172Right-handed alpha
Helix 10
AB1
A
172 177Right-handed alpha
Helix 11
AB2
A
187 194Right-handed 310
Helix 12
AB3
A
212 218Right-handed alpha
Helix 13
AB4
A
222 233Right-handed alpha
Helix 14
AB5
A
240 250Right-handed alpha
Helix 15
AB6
A
274 282Right-handed alpha
Helix 16
AB7
A
283 289Right-handed alpha
Helix 17
AB8
A
325 328Right-handed 310
Helix 18
AB9
A
340 355Right-handed alpha
Helix 19
AC1
B
0 19Right-handed alpha
Helix 20
AC2
B
60 75Right-handed alpha
Helix 21
AC3
B
83 87Right-handed 310
Helix 22
AC4
B
88 92Right-handed 310
Helix 23
AC5
B
95 99Right-handed 310
Helix 24
AC6
B
100 106Right-handed alpha
Helix 25
AC7
B
122 133Right-handed alpha
Helix 26
AC8
B
151 162Right-handed alpha
Helix 27
AC9
B
164 172Right-handed alpha
Helix 28
AD1
B
172 177Right-handed alpha
Helix 29
AD2
B
187 194Right-handed 310
Helix 30
AD3
B
212 218Right-handed alpha
Helix 31
AD4
B
222 233Right-handed alpha
Helix 32
AD5
B
240 250Right-handed alpha
Helix 33
AD6
B
274 282Right-handed alpha
Helix 34
AD7
B
283 289Right-handed alpha
Helix 35
AD8
B
340 355Right-handed alpha
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There are 7 sheets in PDB entry 5E2G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 39first strand
Strand 2
A
22 29anti-parallel
Strand 3
A
330 335anti-parallel
Strand 4
A
318 323anti-parallel
Strand 5
A
306 313anti-parallel
Strand 6
A
267 270anti-parallel
Strand 7
A
260 262anti-parallel
Strand 8
A
253 257anti-parallel
Strand 9
A
291 300anti-parallel
Strand 10
A
142 143anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
220 221anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
204 205anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 39first strand
Strand 2
B
22 29anti-parallel
Strand 3
B
329 335anti-parallel
Strand 4
B
318 324anti-parallel
Strand 5
B
306 313anti-parallel
Strand 6
B
267 270anti-parallel
Strand 7
B
260 262anti-parallel
Strand 8
B
253 257anti-parallel
Strand 9
B
294 300anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
220 221anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 143first strand
Strand 2
B
291 292anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 198first strand
Strand 2
B
204 205anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il