Analysis of interatomic Contacts of Structural Units in PDB entry:
5E2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E2J entry

There are 2 chains in PDB entry 5E2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6ARG 535
B
 PRO 6ALA 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 5E2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
88 102Right-handed alpha
Helix 2
AA2
A
109 114Right-handed alpha
Helix 3
AA3
A
115 117Right-handed 310
Helix 4
AA4
A
151 168Right-handed alpha
Helix 5
AA5
A
168 173Right-handed alpha
Helix 6
AA6
A
188 203Right-handed alpha
Helix 7
AA7
A
241 259Right-handed alpha
Helix 8
AA8
A
263 282Right-handed alpha
Helix 9
AA9
A
305 321Right-handed alpha
Helix 10
AB1
A
322 324Right-handed 310
Helix 11
AB2
A
325 334Right-handed alpha
Helix 12
AB3
A
346 356Right-handed alpha
Helix 13
AB4
A
358 362Right-handed 310
Helix 14
AB5
A
363 388Right-handed alpha
Helix 15
AB6
A
395 399Right-handed 310
Helix 16
AB7
A
402 419Right-handed alpha
Helix 17
AB8
A
426 439Right-handed alpha
Helix 18
AB9
A
462 468Right-handed alpha
Helix 19
AC1
A
488 495Right-handed alpha
Helix 20
AC2
A
499 503Right-handed 310
Helix 21
AC3
A
517 534Right-handed alpha
Helix 22
AC4
B
88 102Right-handed alpha
Helix 23
AC5
B
109 114Right-handed alpha
Helix 24
AC6
B
115 117Right-handed 310
Helix 25
AC7
B
151 168Right-handed alpha
Helix 26
AC8
B
168 173Right-handed alpha
Helix 27
AC9
B
178 182Right-handed 310
Helix 28
AD1
B
188 203Right-handed alpha
Helix 29
AD2
B
227 231Right-handed 310
Helix 30
AD3
B
241 259Right-handed alpha
Helix 31
AD4
B
263 282Right-handed alpha
Helix 32
AD5
B
305 321Right-handed alpha
Helix 33
AD6
B
322 324Right-handed 310
Helix 34
AD7
B
325 334Right-handed alpha
Helix 35
AD8
B
346 356Right-handed alpha
Helix 36
AD9
B
358 362Right-handed 310
Helix 37
AE1
B
363 388Right-handed alpha
Helix 38
AE2
B
395 399Right-handed 310
Helix 39
AE3
B
402 420Right-handed alpha
Helix 40
AE4
B
426 439Right-handed alpha
Helix 41
AE5
B
462 468Right-handed alpha
Helix 42
AE6
B
488 495Right-handed alpha
Helix 43
AE7
B
499 503Right-handed 310
Helix 44
AE8
B
517 532Right-handed alpha
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There are 6 sheets in PDB entry 5E2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
77 84parallel
Strand 3
A
68 74anti-parallel
Strand 4
A
33 37anti-parallel
Strand 5
A
43 48anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 27first strand
Strand 2
A
56 60anti-parallel
Strand 3
A
50 51anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
126 128anti-parallel
Strand 3
A
236 237parallel
Strand 4
A
215 217anti-parallel
Strand 5
A
149 150anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
77 84parallel
Strand 3
B
68 74anti-parallel
Strand 4
B
33 37anti-parallel
Strand 5
B
43 48anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 27first strand
Strand 2
B
56 60anti-parallel
Strand 3
B
50 53anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
126 128anti-parallel
Strand 3
B
236 237parallel
Strand 4
B
215 217anti-parallel
Strand 5
B
149 150anti-parallel
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