Analysis of interatomic Contacts of Structural Units in PDB entry:
5E38

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E38 entry

There are 4 chains in PDB entry 5E38 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -6	PHE 204
B	VAL 3	PHE 204
C	ALA 0	PHE 204
D	ALA -8	PHE 204

There are 24 helices in PDB entry 5E38. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	20	Right-handed alpha
Helix 2	AA2	A	24	44	Right-handed alpha
Helix 3	AA3	A	77	81	Right-handed 310
Helix 4	AA4	A	82	90	Right-handed alpha
Helix 5	AA5	A	135	146	Right-handed alpha
Helix 6	AA6	A	147	149	Right-handed 310
Helix 7	AA7	A	161	172	Right-handed alpha
Helix 8	AA8	B	8	20	Right-handed alpha
Helix 9	AA9	B	24	44	Right-handed alpha
Helix 10	AB1	B	82	90	Right-handed alpha
Helix 11	AB2	B	135	149	Right-handed alpha
Helix 12	AB3	B	161	172	Right-handed alpha
Helix 13	AB4	C	8	20	Right-handed alpha
Helix 14	AB5	C	24	44	Right-handed alpha
Helix 15	AB6	C	77	81	Right-handed 310
Helix 16	AB7	C	82	90	Right-handed alpha
Helix 17	AB8	C	135	148	Right-handed alpha
Helix 18	AB9	C	161	172	Right-handed alpha
Helix 19	AC1	D	8	20	Right-handed alpha
Helix 20	AC2	D	24	44	Right-handed alpha
Helix 21	AC3	D	85	90	Right-handed alpha
Helix 22	AC4	D	135	146	Right-handed alpha
Helix 23	AC5	D	147	149	Right-handed 310
Helix 24	AC6	D	161	172	Right-handed alpha

There are 14 sheets in PDB entry 5E38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	176	179	parallel
Strand 3	A	153	156	parallel
Strand 4	A	125	128	parallel
Strand 5	A	71	74	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	56	first strand
Strand 2	A	59	65	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	132	first strand
Strand 2	A	159	160	parallel
Strand 3	A	181	182	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	186	first strand
Strand 2	A	192	193	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	176	179	parallel
Strand 3	B	154	156	parallel
Strand 4	B	126	128	parallel
Strand 5	B	71	74	parallel
Strand 6	B	94	97	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	55	first strand
Strand 2	B	60	65	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	159	160	parallel
Strand 3	B	181	182	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	186	first strand
Strand 2	B	192	193	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	176	179	parallel
Strand 3	C	153	156	parallel
Strand 4	C	125	128	parallel
Strand 5	C	71	76	parallel
Strand 6	C	97	99	parallel
Strand 7	C	112	115	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	55	first strand
Strand 2	C	60	63	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	132	first strand
Strand 2	C	159	160	parallel
Strand 3	C	181	182	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	5	first strand
Strand 2	D	176	182	parallel
Strand 3	D	153	160	parallel
Strand 4	D	125	128	parallel
Strand 5	D	71	74	parallel
Strand 6	D	94	95	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	5	first strand
Strand 2	D	176	182	parallel
Strand 3	D	153	160	parallel
Strand 4	D	131	132	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	54	first strand
Strand 2	D	61	64	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E38

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E38