Analysis of interatomic Contacts of Structural Units in PDB entry:
5E3C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E3C entry

There are 2 chains in PDB entry 5E3C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3TRP 726
B
 ILE 1TRP 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 5E3C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 26Right-handed alpha
Helix 2
AA2
A
27 46Right-handed alpha
Helix 3
AA3
A
46 51Right-handed alpha
Helix 4
AA4
A
55 70Right-handed alpha
Helix 5
AA5
A
71 80Right-handed alpha
Helix 6
AA6
A
85 103Right-handed alpha
Helix 7
AA7
A
119 128Right-handed alpha
Helix 8
AA8
A
130 136Right-handed alpha
Helix 9
AA9
A
136 153Right-handed alpha
Helix 10
AB1
A
177 191Right-handed alpha
Helix 11
AB2
A
251 267Right-handed alpha
Helix 12
AB3
A
271 288Right-handed alpha
Helix 13
AB4
A
289 303Right-handed alpha
Helix 14
AB5
A
336 349Right-handed alpha
Helix 15
AB6
A
349 355Right-handed alpha
Helix 16
AB7
A
360 364Right-handed 310
Helix 17
AB8
A
395 402Right-handed alpha
Helix 18
AB9
A
410 417Right-handed alpha
Helix 19
AC1
A
428 452Right-handed alpha
Helix 20
AC2
A
494 499Right-handed alpha
Helix 21
AC3
A
502 518Right-handed alpha
Helix 22
AC4
A
521 528Right-handed alpha
Helix 23
AC5
A
532 553Right-handed alpha
Helix 24
AC6
A
566 583Right-handed alpha
Helix 25
AC7
A
608 613Right-handed alpha
Helix 26
AC8
A
613 631Right-handed alpha
Helix 27
AC9
A
633 645Right-handed alpha
Helix 28
AD1
A
654 665Right-handed alpha
Helix 29
AD2
A
692 702Right-handed alpha
Helix 30
AD3
A
707 722Right-handed alpha
Helix 31
AD4
A
723 726Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 5E3C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
671 673parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 204first strand
Strand 2
A
210 217anti-parallel
Strand 3
A
242 250parallel
Strand 4
A
236 239anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 314first strand
Strand 2
A
328 335anti-parallel
Strand 3
A
372 382anti-parallel
Strand 4
A
405 409parallel
Strand 5
A
389 392anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
557 558first strand
Strand 2
A
563 564anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 593first strand
Strand 2
A
599 605anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
676 679first strand
Strand 2
A
684 687anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il