Analysis of interatomic Contacts of Structural Units in PDB entry:
5E3E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E3E entry

There are 6 chains in PDB entry 5E3E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1HIS 99
B
 GLY 168PRO 281
C
 GLU 5ASN 98
D
 GLY 169PRO 281
E
 MSE 1HIS 99
F
 GLY 168PRO 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5E3E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed alpha
Helix 2
AA2
A
7 17Right-handed alpha
Helix 3
AA3
A
21 26Right-handed alpha
Helix 4
AA4
A
28 40Right-handed alpha
Helix 5
AA5
A
41 57Right-handed alpha
Helix 6
AA6
A
61 71Right-handed alpha
Helix 7
AA7
A
78 82Right-handed 310
Helix 8
AA8
A
85 97Right-handed alpha
Helix 9
AA9
B
170 176Right-handed 310
Helix 10
AB1
B
179 187Right-handed alpha
Helix 11
AB2
B
200 215Right-handed alpha
Helix 12
AB3
B
215 226Right-handed alpha
Helix 13
AB4
C
7 17Right-handed alpha
Helix 14
AB5
C
21 26Right-handed alpha
Helix 15
AB6
C
28 40Right-handed alpha
Helix 16
AB7
C
41 58Right-handed alpha
Helix 17
AB8
C
61 71Right-handed alpha
Helix 18
AB9
C
78 82Right-handed 310
Helix 19
AC1
C
85 97Right-handed alpha
Helix 20
AC2
D
170 176Right-handed 310
Helix 21
AC3
D
179 187Right-handed alpha
Helix 22
AC4
D
200 215Right-handed alpha
Helix 23
AC5
D
215 226Right-handed alpha
Helix 24
AC6
E
2 7Right-handed alpha
Helix 25
AC7
E
7 17Right-handed alpha
Helix 26
AC8
E
21 27Right-handed alpha
Helix 27
AC9
E
28 40Right-handed alpha
Helix 28
AD1
E
41 57Right-handed alpha
Helix 29
AD2
E
61 71Right-handed alpha
Helix 30
AD3
E
78 82Right-handed 310
Helix 31
AD4
E
85 99Right-handed alpha
Helix 32
AD5
F
172 176Right-handed 310
Helix 33
AD6
F
179 190Right-handed alpha
Helix 34
AD7
F
200 215Right-handed alpha
Helix 35
AD8
F
215 226Right-handed alpha
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There are 6 sheets in PDB entry 5E3E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 198first strand
Strand 2
B
242 246anti-parallel
Strand 3
B
253 255anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 235first strand
Strand 2
B
257 264anti-parallel
Strand 3
B
272 280anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
194 198first strand
Strand 2
D
242 246anti-parallel
Strand 3
D
253 255anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
230 235first strand
Strand 2
D
257 264anti-parallel
Strand 3
D
272 280anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
194 198first strand
Strand 2
F
242 246anti-parallel
Strand 3
F
252 255anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
230 235first strand
Strand 2
F
257 264anti-parallel
Strand 3
F
272 280anti-parallel
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