Analysis of interatomic Contacts of Structural Units in PDB entry:
5E3S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E3S entry

There is 1 chain in PDB entry 5E3S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 56SER 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5E3S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 80Right-handed alpha
Helix 2
AA2
A
86 91Right-handed 310
Helix 3
AA3
A
120 131Right-handed alpha
Helix 4
AA4
A
134 144Right-handed alpha
Helix 5
AA5
A
174 193Right-handed alpha
Helix 6
AA6
A
247 252Right-handed alpha
Helix 7
AA7
A
259 267Right-handed alpha
Helix 8
AA8
A
274 295Right-handed alpha
Helix 9
AA9
A
406 422Right-handed alpha
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There are 5 sheets in PDB entry 5E3S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 98first strand
Strand 2
A
114 119anti-parallel
Strand 3
A
203 211anti-parallel
Strand 4
A
214 222anti-parallel
Strand 5
A
168 169anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 98first strand
Strand 2
A
114 119anti-parallel
Strand 3
A
203 211anti-parallel
Strand 4
A
214 222anti-parallel
Strand 5
A
172 173anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 150first strand
Strand 2
A
160 162anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
A
233 237parallel
Strand 3
A
301 308anti-parallel
Strand 4
A
369 377anti-parallel
Strand 5
A
361 363anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 273first strand
Strand 2
A
424 426parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il