Analysis of interatomic Contacts of Structural Units in PDB entry:
5E4B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E4B entry

There are 2 chains in PDB entry 5E4B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 9ASP 184
B
 GLU 9ASP 184
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 5E4B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 39Right-handed alpha
Helix 2
AA2
A
40 47Right-handed 310
Helix 3
AA3
A
94 96Right-handed 310
Helix 4
AA4
A
110 114Right-handed 310
Helix 5
AA5
A
127 131Right-handed 310
Helix 6
AA6
A
149 173Right-handed alpha
Helix 7
AA7
A
175 177Right-handed 310
Helix 8
AA8
B
30 39Right-handed alpha
Helix 9
AA9
B
40 47Right-handed 310
Helix 10
AB1
B
94 96Right-handed 310
Helix 11
AB2
B
110 114Right-handed 310
Helix 12
AB3
B
127 131Right-handed 310
Helix 13
AB4
B
149 173Right-handed alpha
Helix 14
AB5
B
175 177Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 5E4B. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 59first strand
Strand 2
A
68 73anti-parallel
Strand 3
A
83 93anti-parallel
Strand 4
A
98 106anti-parallel
Strand 5
A
115 125anti-parallel
Strand 6
A
134 143anti-parallel
Strand 7
A
18 26anti-parallel
Strand 8
A
179 181anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 59first strand
Strand 2
B
68 73anti-parallel
Strand 3
B
83 93anti-parallel
Strand 4
B
98 106anti-parallel
Strand 5
B
115 125anti-parallel
Strand 6
B
134 143anti-parallel
Strand 7
B
18 26anti-parallel
Strand 8
B
179 181anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il