Analysis of interatomic Contacts of Structural Units in PDB entry:
5E4F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E4F entry

There are 2 chains in PDB entry 5E4F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 189ALA 625
B
 PHE 197ALA 625
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5E4F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
212 221Right-handed alpha
Helix 2
AA2
A
231 246Right-handed alpha
Helix 3
AA3
A
270 276Right-handed alpha
Helix 4
AA4
A
296 310Right-handed alpha
Helix 5
AA5
A
355 359Right-handed 310
Helix 6
AA6
A
370 384Right-handed alpha
Helix 7
AA7
A
396 400Right-handed 310
Helix 8
AA8
A
412 416Right-handed 310
Helix 9
AA9
A
454 463Right-handed alpha
Helix 10
AB1
A
487 501Right-handed alpha
Helix 11
AB2
A
505 518Right-handed alpha
Helix 12
AB3
A
528 538Right-handed alpha
Helix 13
AB4
A
543 554Right-handed alpha
Helix 14
AB5
A
557 571Right-handed alpha
Helix 15
AB6
A
579 592Right-handed 310
Helix 16
AB7
A
613 625Right-handed alpha
Helix 17
AB8
B
212 220Right-handed alpha
Helix 18
AB9
B
231 245Right-handed alpha
Helix 19
AC1
B
270 276Right-handed alpha
Helix 20
AC2
B
296 307Right-handed alpha
Helix 21
AC3
B
309 314Right-handed alpha
Helix 22
AC4
B
355 359Right-handed 310
Helix 23
AC5
B
370 383Right-handed alpha
Helix 24
AC6
B
396 400Right-handed 310
Helix 25
AC7
B
412 416Right-handed 310
Helix 26
AC8
B
454 463Right-handed alpha
Helix 27
AC9
B
487 501Right-handed alpha
Helix 28
AD1
B
505 518Right-handed alpha
Helix 29
AD2
B
528 538Right-handed alpha
Helix 30
AD3
B
543 554Right-handed alpha
Helix 31
AD4
B
557 571Right-handed alpha
Helix 32
AD5
B
579 592Right-handed 310
Helix 33
AD6
B
613 623Right-handed alpha
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There are 10 sheets in PDB entry 5E4F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 203first strand
Strand 2
A
317 322parallel
Strand 3
A
286 289parallel
Strand 4
A
225 229parallel
Strand 5
A
265 269parallel
Strand 6
A
251 253parallel
Strand 7
A
258 259anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 340first strand
Strand 2
A
471 475parallel
Strand 3
A
424 427parallel
Strand 4
A
363 367parallel
Strand 5
A
406 410parallel
Strand 6
A
388 391parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 349first strand
Strand 2
A
352 354anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 437first strand
Strand 2
A
445 452anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 597first strand
Strand 2
A
609 610parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 203first strand
Strand 2
B
317 322parallel
Strand 3
B
286 290parallel
Strand 4
B
225 229parallel
Strand 5
B
265 269parallel
Strand 6
B
251 253parallel
Strand 7
B
258 259anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 340first strand
Strand 2
B
471 475parallel
Strand 3
B
424 427parallel
Strand 4
B
363 367parallel
Strand 5
B
406 410parallel
Strand 6
B
388 391parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 349first strand
Strand 2
B
352 354anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
430 437first strand
Strand 2
B
445 452anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
596 597first strand
Strand 2
B
609 610parallel
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