Analysis of interatomic Contacts of Structural Units in PDB entry:
5E4H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E4H entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 24 chains in PDB entry 5E4H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 553	GLY 611
A	THR 613	GLU 662
A	VAL 664	LEU 809
B	SER 554	GLY 611
B	THR 613	GLU 662
B	VAL 664	LYS 808
C	THR 556	GLY 611
C	THR 613	GLU 662
C	VAL 664	VAL 807
D	ILE 552	GLY 611
D	THR 613	GLU 662
D	VAL 664	LEU 809
E	SER 554	GLY 611
E	THR 613	GLU 662
E	VAL 664	LYS 808
F	ILE 552	GLY 611
F	THR 613	GLU 662
F	VAL 664	LEU 809
G	ILE 552	GLY 611
G	THR 613	GLU 662
G	VAL 664	LEU 809
H	GLU 555	GLY 611
H	THR 613	GLU 662
H	VAL 664	LYS 808

There are 48 helices in PDB entry 5E4H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	619	621	Right-handed 310
Helix 2	AA2	A	631	636	Right-handed alpha
Helix 3	AA3	A	656	680	Right-handed alpha
Helix 4	AA4	A	735	748	Right-handed alpha
Helix 5	AA5	A	782	794	Right-handed alpha
Helix 6	AA6	A	797	803	Right-handed alpha
Helix 7	AA7	B	619	621	Right-handed 310
Helix 8	AA8	B	631	636	Right-handed alpha
Helix 9	AA9	B	656	680	Right-handed alpha
Helix 10	AB1	B	735	748	Right-handed alpha
Helix 11	AB2	B	782	792	Right-handed alpha
Helix 12	AB3	B	797	803	Right-handed alpha
Helix 13	AB4	C	606	608	Right-handed 310
Helix 14	AB5	C	619	621	Right-handed 310
Helix 15	AB6	C	631	636	Right-handed alpha
Helix 16	AB7	C	656	680	Right-handed alpha
Helix 17	AB8	C	735	748	Right-handed alpha
Helix 18	AB9	C	782	792	Right-handed alpha
Helix 19	AC1	C	797	803	Right-handed alpha
Helix 20	AC2	D	631	636	Right-handed alpha
Helix 21	AC3	D	656	680	Right-handed alpha
Helix 22	AC4	D	735	748	Right-handed alpha
Helix 23	AC5	D	782	794	Right-handed alpha
Helix 24	AC6	D	797	803	Right-handed alpha
Helix 25	AC7	E	619	621	Right-handed 310
Helix 26	AC8	E	631	636	Right-handed alpha
Helix 27	AC9	E	656	680	Right-handed alpha
Helix 28	AD1	E	735	748	Right-handed alpha
Helix 29	AD2	E	782	792	Right-handed alpha
Helix 30	AD3	E	797	803	Right-handed alpha
Helix 31	AD4	F	631	636	Right-handed alpha
Helix 32	AD5	F	656	680	Right-handed alpha
Helix 33	AD6	F	735	748	Right-handed alpha
Helix 34	AD7	F	782	794	Right-handed alpha
Helix 35	AD8	F	797	803	Right-handed alpha
Helix 36	AD9	G	619	621	Right-handed 310
Helix 37	AE1	G	631	636	Right-handed alpha
Helix 38	AE2	G	656	680	Right-handed alpha
Helix 39	AE3	G	735	748	Right-handed alpha
Helix 40	AE4	G	782	794	Right-handed alpha
Helix 41	AE5	G	797	803	Right-handed alpha
Helix 42	AE6	H	606	608	Right-handed 310
Helix 43	AE7	H	619	621	Right-handed 310
Helix 44	AE8	H	631	636	Right-handed alpha
Helix 45	AE9	H	656	680	Right-handed alpha
Helix 46	AF1	H	735	748	Right-handed alpha
Helix 47	AF2	H	782	792	Right-handed alpha
Helix 48	AF3	H	797	803	Right-handed alpha

There are 30 sheets in PDB entry 5E4H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	587	588	first strand
Strand 2	A	592	604	anti-parallel
Strand 3	A	571	581	anti-parallel
Strand 4	A	623	624	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	587	588	first strand
Strand 2	A	592	604	anti-parallel
Strand 3	A	641	647	anti-parallel
Strand 4	A	708	714	anti-parallel
Strand 5	A	692	696	anti-parallel
Strand 6	A	558	566	anti-parallel
Strand 7	A	571	581	anti-parallel
Strand 8	A	623	624	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	687	688	first strand
Strand 2	A	763	765	parallel
Strand 3	A	758	760	anti-parallel
Strand 4	A	720	722	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	753	755	first strand
Strand 2	A	768	770	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	623	624	first strand
Strand 2	B	571	581	parallel
Strand 3	B	592	604	anti-parallel
Strand 4	B	641	647	anti-parallel
Strand 5	B	708	714	anti-parallel
Strand 6	B	692	696	anti-parallel
Strand 7	B	558	566	anti-parallel
Strand 8	B	571	581	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	687	688	first strand
Strand 2	B	763	765	parallel
Strand 3	B	758	760	anti-parallel
Strand 4	B	720	722	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	753	755	first strand
Strand 2	B	768	770	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	623	624	first strand
Strand 2	C	571	581	parallel
Strand 3	C	592	604	anti-parallel
Strand 4	C	641	647	anti-parallel
Strand 5	C	708	714	anti-parallel
Strand 6	C	692	696	anti-parallel
Strand 7	C	558	566	anti-parallel
Strand 8	C	571	581	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	687	688	first strand
Strand 2	C	763	765	parallel
Strand 3	C	758	760	anti-parallel
Strand 4	C	720	722	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	753	755	first strand
Strand 2	C	768	770	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	587	588	first strand
Strand 2	D	592	604	anti-parallel
Strand 3	D	571	581	anti-parallel
Strand 4	D	623	624	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	587	588	first strand
Strand 2	D	592	604	anti-parallel
Strand 3	D	641	647	anti-parallel
Strand 4	D	708	714	anti-parallel
Strand 5	D	692	696	anti-parallel
Strand 6	D	558	566	anti-parallel
Strand 7	D	571	581	anti-parallel
Strand 8	D	623	624	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	687	688	first strand
Strand 2	D	763	765	parallel
Strand 3	D	758	760	anti-parallel
Strand 4	D	720	722	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	753	755	first strand
Strand 2	D	768	770	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	587	588	first strand
Strand 2	E	592	604	anti-parallel
Strand 3	E	571	581	anti-parallel
Strand 4	E	623	624	parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	587	588	first strand
Strand 2	E	592	604	anti-parallel
Strand 3	E	641	647	anti-parallel
Strand 4	E	708	714	anti-parallel
Strand 5	E	692	696	anti-parallel
Strand 6	E	558	566	anti-parallel
Strand 7	E	571	581	anti-parallel
Strand 8	E	623	624	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	687	688	first strand
Strand 2	E	763	765	parallel
Strand 3	E	758	760	anti-parallel
Strand 4	E	720	722	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	753	755	first strand
Strand 2	E	768	770	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	587	588	first strand
Strand 2	F	592	604	anti-parallel
Strand 3	F	571	581	anti-parallel
Strand 4	F	623	624	parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	587	588	first strand
Strand 2	F	592	604	anti-parallel
Strand 3	F	641	647	anti-parallel
Strand 4	F	708	714	anti-parallel
Strand 5	F	692	696	anti-parallel
Strand 6	F	558	566	anti-parallel
Strand 7	F	571	581	anti-parallel
Strand 8	F	623	624	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	687	688	first strand
Strand 2	F	763	765	parallel
Strand 3	F	758	760	anti-parallel
Strand 4	F	720	722	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	753	755	first strand
Strand 2	F	768	770	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	587	588	first strand
Strand 2	G	593	604	anti-parallel
Strand 3	G	571	581	anti-parallel
Strand 4	G	623	624	parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	587	588	first strand
Strand 2	G	593	604	anti-parallel
Strand 3	G	641	646	anti-parallel
Strand 4	G	708	714	anti-parallel
Strand 5	G	692	696	anti-parallel
Strand 6	G	558	566	anti-parallel
Strand 7	G	571	581	anti-parallel
Strand 8	G	623	624	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	687	688	first strand
Strand 2	G	763	765	parallel
Strand 3	G	758	760	anti-parallel
Strand 4	G	720	722	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	753	755	first strand
Strand 2	G	768	770	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	587	588	first strand
Strand 2	H	592	604	anti-parallel
Strand 3	H	571	581	anti-parallel
Strand 4	H	623	624	parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	587	588	first strand
Strand 2	H	592	604	anti-parallel
Strand 3	H	641	647	anti-parallel
Strand 4	H	708	714	anti-parallel
Strand 5	H	692	696	anti-parallel
Strand 6	H	558	566	anti-parallel
Strand 7	H	571	581	anti-parallel
Strand 8	H	623	624	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	687	688	first strand
Strand 2	H	763	765	parallel
Strand 3	H	758	760	anti-parallel
Strand 4	H	720	722	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	753	755	first strand
Strand 2	H	768	770	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E4H

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E4H