Analysis of interatomic Contacts of Structural Units in PDB entry:
5E4K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E4K entry

There is 1 chain in PDB entry 5E4K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 37LYS 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5E4K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 74Right-handed 310
Helix 2
AA2
A
125 134Right-handed alpha
Helix 3
AA3
A
218 223Right-handed alpha
Helix 4
AA4
A
258 269Right-handed alpha
Helix 5
AA5
A
278 290Right-handed alpha
Helix 6
AA6
A
402 413Right-handed alpha
Helix 7
AA7
A
422 433Right-handed alpha
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There are 8 sheets in PDB entry 5E4K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
53 58anti-parallel
Strand 3
A
44 48anti-parallel
Strand 4
A
76 80anti-parallel
Strand 5
A
84 87anti-parallel
Strand 6
A
92 95anti-parallel
Strand 7
A
108 110anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
53 58anti-parallel
Strand 3
A
44 48anti-parallel
Strand 4
A
158 160anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
196 198anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
225 227anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 241first strand
Strand 2
A
248 257anti-parallel
Strand 3
A
355 361anti-parallel
Strand 4
A
272 273anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 301first strand
Strand 2
A
333 339anti-parallel
Strand 3
A
345 350anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 389first strand
Strand 2
A
392 401anti-parallel
Strand 3
A
500 506anti-parallel
Strand 4
A
416 417anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 455first strand
Strand 2
A
439 449anti-parallel
Strand 3
A
481 485anti-parallel
Strand 4
A
490 494anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il