Analysis of interatomic Contacts of Structural Units in PDB entry:
5E4R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E4R entry

There is 1 chain in PDB entry 5E4R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2MET 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5E4R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 10Right-handed 310
Helix 2
AA2
A
12 16Right-handed 310
Helix 3
AA3
A
26 39Right-handed alpha
Helix 4
AA4
A
51 60Right-handed alpha
Helix 5
AA5
A
67 74Right-handed alpha
Helix 6
AA6
A
82 84Right-handed 310
Helix 7
AA7
A
85 94Right-handed alpha
Helix 8
AA8
A
109 114Right-handed alpha
Helix 9
AA9
A
133 143Right-handed alpha
Helix 10
AB1
A
160 172Right-handed alpha
Helix 11
AB2
A
173 177Right-handed 310
Helix 12
AB3
A
183 198Right-handed alpha
Helix 13
AB4
A
200 217Right-handed alpha
Helix 14
AB5
A
220 250Right-handed alpha
Helix 15
AB6
A
252 267Right-handed alpha
Helix 16
AB7
A
268 284Right-handed alpha
Helix 17
AB8
A
285 297Right-handed alpha
Helix 18
AB9
A
299 312Right-handed alpha
Helix 19
AC1
A
312 327Right-handed alpha
Helix 20
AC2
A
340 365Right-handed alpha
Helix 21
AC3
A
367 376Right-handed alpha
Helix 22
AC4
A
376 398Right-handed alpha
Helix 23
AC5
A
399 414Right-handed alpha
Helix 24
AC6
A
415 431Right-handed alpha
Helix 25
AC7
A
432 444Right-handed alpha
Helix 26
AC8
A
446 458Right-handed alpha
Helix 27
AC9
A
459 474Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5E4R.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
179 181anti-parallel
Strand 3
A
149 155parallel
Strand 4
A
125 130anti-parallel
Strand 5
A
103 106parallel
Strand 6
A
76 79parallel
Strand 7
A
19 23parallel
Strand 8
A
42 47parallel
Strand 9
A
65 66parallel
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