Analysis of interatomic Contacts of Structural Units in PDB entry:
5E4S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E4S entry

There is 1 chain in PDB entry 5E4S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 596LYS 898
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 5E4S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
724 728Right-handed 310
Helix 2
AA2
A
846 850Right-handed 310
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There are 8 sheets in PDB entry 5E4S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 608first strand
Strand 2
A
613 618anti-parallel
Strand 3
A
658 662anti-parallel
Strand 4
A
646 648anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
643 644first strand
Strand 2
A
629 635anti-parallel
Strand 3
A
669 677anti-parallel
Strand 4
A
692 693anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
707 708first strand
Strand 2
A
715 719anti-parallel
Strand 3
A
759 763anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
748 752first strand
Strand 2
A
734 741anti-parallel
Strand 3
A
772 781anti-parallel
Strand 4
A
784 788anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
748 752first strand
Strand 2
A
734 741anti-parallel
Strand 3
A
772 781anti-parallel
Strand 4
A
792 795anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
806 812first strand
Strand 2
A
818 823anti-parallel
Strand 3
A
861 864anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
851 854first strand
Strand 2
A
835 842anti-parallel
Strand 3
A
872 881anti-parallel
Strand 4
A
884 888anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
851 854first strand
Strand 2
A
835 842anti-parallel
Strand 3
A
872 881anti-parallel
Strand 4
A
892 895anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il