Analysis of interatomic Contacts of Structural Units in PDB entry:
5E4W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E4W entry

There are 6 chains in PDB entry 5E4W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 12SER 120
B
 ASP 12GLY 119
C
 GLN 265GLN 369
D
 GLN 265GLN 369
E
 SER 453THR 461
F
 LYS 454THR 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5E4W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 26Right-handed alpha
Helix 2
AA2
A
42 48Right-handed alpha
Helix 3
AA3
A
48 59Right-handed alpha
Helix 4
AA4
A
76 81Right-handed 310
Helix 5
AA5
A
105 120Right-handed alpha
Helix 6
AA6
B
21 26Right-handed alpha
Helix 7
AA7
B
42 48Right-handed alpha
Helix 8
AA8
B
48 59Right-handed alpha
Helix 9
AA9
B
76 81Right-handed 310
Helix 10
AB1
B
105 119Right-handed alpha
Helix 11
AB2
C
303 305Right-handed 310
Helix 12
AB3
C
306 315Right-handed alpha
Helix 13
AB4
C
355 357Right-handed 310
Helix 14
AB5
C
358 369Right-handed alpha
Helix 15
AB6
D
303 305Right-handed 310
Helix 16
AB7
D
306 315Right-handed alpha
Helix 17
AB8
D
355 357Right-handed 310
Helix 18
AB9
D
358 364Right-handed alpha
Helix 19
AC1
D
365 369Right-handed 310
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There are 9 sheets in PDB entry 5E4W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
64 69parallel
Strand 3
A
32 38parallel
Strand 4
A
87 92anti-parallel
Strand 5
A
95 101anti-parallel
Strand 6
B
95 101anti-parallel
Strand 7
B
87 92anti-parallel
Strand 8
B
32 38anti-parallel
Strand 9
B
64 69parallel
Strand 10
B
15 16parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
D
268 269anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 85first strand
Strand 2
C
268 269anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
272 281first strand
Strand 2
C
284 291anti-parallel
Strand 3
C
297 301anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
317 320first strand
Strand 2
E
456 459anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
322 330first strand
Strand 2
C
337 343anti-parallel
Strand 3
C
350 353anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
272 278first strand
Strand 2
D
286 291anti-parallel
Strand 3
D
297 301anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
317 320first strand
Strand 2
F
456 459anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
322 330first strand
Strand 2
D
337 343anti-parallel
Strand 3
D
350 353anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il