Analysis of interatomic Contacts of Structural Units in PDB entry:
5E4Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E4Y entry

There are 2 chains in PDB entry 5E4Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2ALA 348
B
 SER 3ALA 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 5E4Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 11Right-handed alpha
Helix 2
AA2
A
59 67Right-handed alpha
Helix 3
AA3
A
99 107Right-handed 310
Helix 4
AA4
A
111 126Right-handed alpha
Helix 5
AA5
A
139 152Right-handed alpha
Helix 6
AA6
A
169 185Right-handed alpha
Helix 7
AA7
A
186 193Right-handed 310
Helix 8
AA8
A
196 199Right-handed 310
Helix 9
AA9
A
200 215Right-handed alpha
Helix 10
AB1
A
217 223Right-handed alpha
Helix 11
AB2
A
224 229Right-handed alpha
Helix 12
AB3
A
233 241Right-handed alpha
Helix 13
AB4
A
241 247Right-handed alpha
Helix 14
AB5
A
250 263Right-handed alpha
Helix 15
AB6
A
265 270Right-handed 310
Helix 16
AB7
A
273 279Right-handed alpha
Helix 17
AB8
A
297 306Right-handed alpha
Helix 18
AB9
A
321 327Right-handed 310
Helix 19
AC1
A
329 346Right-handed alpha
Helix 20
AC2
B
6 11Right-handed alpha
Helix 21
AC3
B
59 67Right-handed alpha
Helix 22
AC4
B
99 107Right-handed 310
Helix 23
AC5
B
111 126Right-handed alpha
Helix 24
AC6
B
139 152Right-handed alpha
Helix 25
AC7
B
169 185Right-handed alpha
Helix 26
AC8
B
186 193Right-handed 310
Helix 27
AC9
B
196 199Right-handed 310
Helix 28
AD1
B
200 215Right-handed alpha
Helix 29
AD2
B
217 223Right-handed alpha
Helix 30
AD3
B
233 241Right-handed alpha
Helix 31
AD4
B
241 247Right-handed alpha
Helix 32
AD5
B
250 263Right-handed alpha
Helix 33
AD6
B
265 269Right-handed 310
Helix 34
AD7
B
273 279Right-handed alpha
Helix 35
AD8
B
297 306Right-handed alpha
Helix 36
AD9
B
321 327Right-handed 310
Helix 37
AE1
B
329 346Right-handed alpha
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There are 4 sheets in PDB entry 5E4Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
33 39anti-parallel
Strand 3
A
80 84anti-parallel
Strand 4
A
49 53parallel
Strand 5
A
134 138parallel
Strand 6
A
158 162parallel
Strand 7
A
284 288parallel
Strand 8
A
312 313parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
28 29anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
33 39anti-parallel
Strand 3
B
80 84anti-parallel
Strand 4
B
49 53parallel
Strand 5
B
134 138parallel
Strand 6
B
158 162parallel
Strand 7
B
284 288parallel
Strand 8
B
311 313parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 22first strand
Strand 2
B
28 29anti-parallel
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