Analysis of interatomic Contacts of Structural Units in PDB entry:
5E53

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E53 entry

There are 4 chains in PDB entry 5E53 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 595	LYS 893
B	GLY 593	LYS 893
C	PRO 594	LYS 893
D	GLY 593	LYS 893

There are 8 helices in PDB entry 5E53. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	722	726	Right-handed 310
Helix 2	AA2	A	841	845	Right-handed 310
Helix 3	AA3	B	722	726	Right-handed 310
Helix 4	AA4	B	841	845	Right-handed 310
Helix 5	AA5	C	722	726	Right-handed 310
Helix 6	AA6	C	841	845	Right-handed 310
Helix 7	AA7	D	722	726	Right-handed 310
Helix 8	AA8	D	841	845	Right-handed 310

There are 33 sheets in PDB entry 5E53. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	606	first strand
Strand 2	A	610	615	anti-parallel
Strand 3	A	656	660	anti-parallel
Strand 4	A	645	646	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	641	642	first strand
Strand 2	A	629	633	anti-parallel
Strand 3	A	667	673	anti-parallel
Strand 4	A	690	691	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	706	first strand
Strand 2	A	713	719	anti-parallel
Strand 3	A	757	761	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	746	750	first strand
Strand 2	A	732	739	anti-parallel
Strand 3	A	770	779	anti-parallel
Strand 4	A	782	783	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	746	750	first strand
Strand 2	A	732	739	anti-parallel
Strand 3	A	770	779	anti-parallel
Strand 4	A	790	793	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	804	810	first strand
Strand 2	A	816	821	anti-parallel
Strand 3	A	856	859	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	846	851	first strand
Strand 2	A	830	837	anti-parallel
Strand 3	A	873	876	anti-parallel
Strand 4	A	879	880	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	846	851	first strand
Strand 2	A	830	837	anti-parallel
Strand 3	A	867	870	anti-parallel
Strand 4	A	887	890	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	599	604	first strand
Strand 2	B	611	616	anti-parallel
Strand 3	B	656	660	anti-parallel
Strand 4	B	644	646	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	642	first strand
Strand 2	B	627	634	anti-parallel
Strand 3	B	667	676	anti-parallel
Strand 4	B	679	680	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	642	first strand
Strand 2	B	627	634	anti-parallel
Strand 3	B	667	676	anti-parallel
Strand 4	B	690	691	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	705	706	first strand
Strand 2	B	713	717	anti-parallel
Strand 3	B	757	761	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	746	750	first strand
Strand 2	B	732	739	anti-parallel
Strand 3	B	770	779	anti-parallel
Strand 4	B	782	783	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	746	750	first strand
Strand 2	B	732	739	anti-parallel
Strand 3	B	770	779	anti-parallel
Strand 4	B	790	793	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	804	807	first strand
Strand 2	B	816	821	anti-parallel
Strand 3	B	856	859	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	846	850	first strand
Strand 2	B	830	837	anti-parallel
Strand 3	B	867	876	anti-parallel
Strand 4	B	879	880	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	846	850	first strand
Strand 2	B	830	837	anti-parallel
Strand 3	B	867	876	anti-parallel
Strand 4	B	887	890	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	599	606	first strand
Strand 2	C	611	616	anti-parallel
Strand 3	C	656	659	anti-parallel
Strand 4	C	645	646	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	641	642	first strand
Strand 2	C	627	633	anti-parallel
Strand 3	C	667	675	anti-parallel
Strand 4	C	690	691	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	705	706	first strand
Strand 2	C	713	717	anti-parallel
Strand 3	C	757	761	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	746	750	first strand
Strand 2	C	732	739	anti-parallel
Strand 3	C	770	779	anti-parallel
Strand 4	C	782	783	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	746	750	first strand
Strand 2	C	732	739	anti-parallel
Strand 3	C	770	779	anti-parallel
Strand 4	C	790	793	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	804	810	first strand
Strand 2	C	816	821	anti-parallel
Strand 3	C	856	859	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	846	851	first strand
Strand 2	C	830	837	anti-parallel
Strand 3	C	867	875	anti-parallel
Strand 4	C	887	890	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	601	606	first strand
Strand 2	D	611	615	anti-parallel
Strand 3	D	656	659	anti-parallel
Strand 4	D	645	646	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	641	642	first strand
Strand 2	D	627	633	anti-parallel
Strand 3	D	667	676	anti-parallel
Strand 4	D	679	683	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	650	651	first strand
Strand 2	D	627	633	anti-parallel
Strand 3	D	667	676	anti-parallel
Strand 4	D	690	691	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	705	706	first strand
Strand 2	D	713	717	anti-parallel
Strand 3	D	757	761	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	746	750	first strand
Strand 2	D	732	739	anti-parallel
Strand 3	D	770	779	anti-parallel
Strand 4	D	782	783	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	746	750	first strand
Strand 2	D	732	739	anti-parallel
Strand 3	D	770	779	anti-parallel
Strand 4	D	790	793	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	804	810	first strand
Strand 2	D	816	821	anti-parallel
Strand 3	D	856	859	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	846	851	first strand
Strand 2	D	830	837	anti-parallel
Strand 3	D	867	876	anti-parallel
Strand 4	D	879	880	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	846	851	first strand
Strand 2	D	830	837	anti-parallel
Strand 3	D	867	876	anti-parallel
Strand 4	D	887	890	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E53

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E53