Analysis of interatomic Contacts of Structural Units in PDB entry:
5E55

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E55 entry

There are 2 chains in PDB entry 5E55 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 596	LYS 899
B	PRO 594	LYS 900

There are 2 helices in PDB entry 5E55. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	725	729	Right-handed 310
Helix 2	AA2	B	725	729	Right-handed 310

There are 17 sheets in PDB entry 5E55. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	609	first strand
Strand 2	A	613	619	anti-parallel
Strand 3	A	659	663	anti-parallel
Strand 4	A	647	649	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	644	645	first strand
Strand 2	A	630	636	anti-parallel
Strand 3	A	670	678	anti-parallel
Strand 4	A	683	686	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	653	654	first strand
Strand 2	A	630	636	anti-parallel
Strand 3	A	670	678	anti-parallel
Strand 4	A	693	694	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	709	first strand
Strand 2	A	716	722	anti-parallel
Strand 3	A	760	764	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	749	754	first strand
Strand 2	A	735	742	anti-parallel
Strand 3	A	773	782	anti-parallel
Strand 4	A	785	786	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	749	754	first strand
Strand 2	A	735	742	anti-parallel
Strand 3	A	773	782	anti-parallel
Strand 4	A	793	796	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	810	812	first strand
Strand 2	A	819	822	anti-parallel
Strand 3	A	863	866	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	850	858	first strand
Strand 2	A	837	845	anti-parallel
Strand 3	A	874	883	anti-parallel
Strand 4	A	886	887	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	850	858	first strand
Strand 2	A	837	845	anti-parallel
Strand 3	A	874	883	anti-parallel
Strand 4	A	894	897	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	602	609	first strand
Strand 2	B	613	619	anti-parallel
Strand 3	B	659	663	anti-parallel
Strand 4	B	647	649	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	644	645	first strand
Strand 2	B	630	636	anti-parallel
Strand 3	B	670	678	anti-parallel
Strand 4	B	693	694	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	705	709	first strand
Strand 2	B	716	722	anti-parallel
Strand 3	B	760	764	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	749	754	first strand
Strand 2	B	735	742	anti-parallel
Strand 3	B	773	782	anti-parallel
Strand 4	B	785	789	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	749	754	first strand
Strand 2	B	735	742	anti-parallel
Strand 3	B	773	782	anti-parallel
Strand 4	B	793	796	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	810	812	first strand
Strand 2	B	819	822	anti-parallel
Strand 3	B	863	866	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	849	858	first strand
Strand 2	B	837	846	anti-parallel
Strand 3	B	874	883	anti-parallel
Strand 4	B	886	890	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	849	858	first strand
Strand 2	B	837	846	anti-parallel
Strand 3	B	874	883	anti-parallel
Strand 4	B	894	897	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E55

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E55