Analysis of interatomic Contacts of Structural Units in PDB entry:
5E58

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E58 entry

There are 6 chains in PDB entry 5E58 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 29	HIS 492
B	HIS 29	ARG 491
C	GLY 28	HIS 492
D	LEU 30	HIS 493
E	GLY 28	ARG 491
F	HIS 29	HIS 492

There are125 helices in PDB entry 5E58. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	46	Right-handed 310
Helix 2	AA2	A	50	63	Right-handed alpha
Helix 3	AA3	A	80	89	Right-handed alpha
Helix 4	AA4	A	104	109	Right-handed alpha
Helix 5	AA5	A	117	135	Right-handed alpha
Helix 6	AA6	A	139	159	Right-handed alpha
Helix 7	AA7	A	167	184	Right-handed alpha
Helix 8	AA8	A	192	211	Right-handed alpha
Helix 9	AA9	A	211	225	Right-handed alpha
Helix 10	AB1	A	229	255	Right-handed alpha
Helix 11	AB2	A	263	275	Right-handed alpha
Helix 12	AB3	A	284	297	Right-handed alpha
Helix 13	AB4	A	301	317	Right-handed alpha
Helix 14	AB5	A	317	332	Right-handed alpha
Helix 15	AB6	A	339	344	Right-handed alpha
Helix 16	AB7	A	346	361	Right-handed alpha
Helix 17	AB8	A	392	397	Right-handed alpha
Helix 18	AB9	A	409	414	Right-handed 310
Helix 19	AC1	A	431	435	Right-handed 310
Helix 20	AC2	A	438	456	Right-handed alpha
Helix 21	AC3	A	464	468	Right-handed 310
Helix 22	AC4	B	42	46	Right-handed 310
Helix 23	AC5	B	50	63	Right-handed alpha
Helix 24	AC6	B	79	89	Right-handed alpha
Helix 25	AC7	B	117	135	Right-handed alpha
Helix 26	AC8	B	142	159	Right-handed alpha
Helix 27	AC9	B	167	184	Right-handed alpha
Helix 28	AD1	B	192	211	Right-handed alpha
Helix 29	AD2	B	211	225	Right-handed alpha
Helix 30	AD3	B	229	255	Right-handed alpha
Helix 31	AD4	B	263	275	Right-handed alpha
Helix 32	AD5	B	284	297	Right-handed alpha
Helix 33	AD6	B	301	317	Right-handed alpha
Helix 34	AD7	B	317	332	Right-handed alpha
Helix 35	AD8	B	339	344	Right-handed alpha
Helix 36	AD9	B	346	361	Right-handed alpha
Helix 37	AE1	B	392	397	Right-handed alpha
Helix 38	AE2	B	409	414	Right-handed 310
Helix 39	AE3	B	431	435	Right-handed 310
Helix 40	AE4	B	438	456	Right-handed alpha
Helix 41	AE5	B	464	468	Right-handed 310
Helix 42	AE6	C	42	46	Right-handed 310
Helix 43	AE7	C	50	63	Right-handed alpha
Helix 44	AE8	C	79	89	Right-handed alpha
Helix 45	AE9	C	104	109	Right-handed alpha
Helix 46	AF1	C	117	135	Right-handed alpha
Helix 47	AF2	C	139	159	Right-handed alpha
Helix 48	AF3	C	167	184	Right-handed alpha
Helix 49	AF4	C	192	211	Right-handed alpha
Helix 50	AF5	C	211	225	Right-handed alpha
Helix 51	AF6	C	229	255	Right-handed alpha
Helix 52	AF7	C	263	275	Right-handed alpha
Helix 53	AF8	C	284	297	Right-handed alpha
Helix 54	AF9	C	302	317	Right-handed alpha
Helix 55	AG1	C	317	332	Right-handed alpha
Helix 56	AG2	C	339	344	Right-handed alpha
Helix 57	AG3	C	346	361	Right-handed alpha
Helix 58	AG4	C	392	397	Right-handed alpha
Helix 59	AG5	C	409	414	Right-handed 310
Helix 60	AG6	C	431	435	Right-handed 310
Helix 61	AG7	C	438	456	Right-handed alpha
Helix 62	AG8	C	464	468	Right-handed 310
Helix 63	AG9	D	42	46	Right-handed 310
Helix 64	AH1	D	50	63	Right-handed alpha
Helix 65	AH2	D	80	89	Right-handed alpha
Helix 66	AH3	D	93	96	Right-handed 310
Helix 67	AH4	D	104	109	Right-handed alpha
Helix 68	AH5	D	117	135	Right-handed alpha
Helix 69	AH6	D	142	159	Right-handed alpha
Helix 70	AH7	D	167	184	Right-handed alpha
Helix 71	AH8	D	192	210	Right-handed alpha
Helix 72	AH9	D	211	225	Right-handed alpha
Helix 73	AI1	D	229	255	Right-handed alpha
Helix 74	AI2	D	263	275	Right-handed alpha
Helix 75	AI3	D	284	297	Right-handed alpha
Helix 76	AI4	D	302	317	Right-handed alpha
Helix 77	AI5	D	317	332	Right-handed alpha
Helix 78	AI6	D	339	345	Right-handed 310
Helix 79	AI7	D	346	361	Right-handed alpha
Helix 80	AI8	D	391	397	Right-handed alpha
Helix 81	AI9	D	409	414	Right-handed 310
Helix 82	AJ1	D	431	435	Right-handed 310
Helix 83	AJ2	D	438	456	Right-handed alpha
Helix 84	AJ3	D	464	468	Right-handed 310
Helix 85	AJ4	E	42	46	Right-handed 310
Helix 86	AJ5	E	50	63	Right-handed alpha
Helix 87	AJ6	E	79	89	Right-handed alpha
Helix 88	AJ7	E	93	96	Right-handed 310
Helix 89	AJ8	E	101	103	Right-handed 310
Helix 90	AJ9	E	104	109	Right-handed alpha
Helix 91	AK1	E	117	135	Right-handed alpha
Helix 92	AK2	E	141	159	Right-handed alpha
Helix 93	AK3	E	167	184	Right-handed alpha
Helix 94	AK4	E	192	211	Right-handed alpha
Helix 95	AK5	E	211	225	Right-handed alpha
Helix 96	AK6	E	229	255	Right-handed alpha
Helix 97	AK7	E	263	275	Right-handed alpha
Helix 98	AK8	E	284	297	Right-handed alpha
Helix 99	AK9	E	302	317	Right-handed alpha
Helix 100	AL1	E	317	332	Right-handed alpha
Helix 101	AL2	E	339	344	Right-handed alpha
Helix 102	AL3	E	346	361	Right-handed alpha
Helix 103	AL4	E	391	397	Right-handed alpha
Helix 104	AL5	E	409	414	Right-handed 310
Helix 105	AL6	E	438	456	Right-handed alpha
Helix 106	AL7	F	42	46	Right-handed 310
Helix 107	AL8	F	50	63	Right-handed alpha
Helix 108	AL9	F	79	89	Right-handed alpha
Helix 109	AM1	F	93	96	Right-handed 310
Helix 110	AM2	F	104	109	Right-handed alpha
Helix 111	AM3	F	117	134	Right-handed alpha
Helix 112	AM4	F	142	161	Right-handed alpha
Helix 113	AM5	F	167	184	Right-handed alpha
Helix 114	AM6	F	192	211	Right-handed alpha
Helix 115	AM7	F	211	225	Right-handed alpha
Helix 116	AM8	F	229	255	Right-handed alpha
Helix 117	AM9	F	263	275	Right-handed alpha
Helix 118	AN1	F	284	297	Right-handed alpha
Helix 119	AN2	F	302	317	Right-handed alpha
Helix 120	AN3	F	317	332	Right-handed alpha
Helix 121	AN4	F	339	344	Right-handed alpha
Helix 122	AN5	F	346	361	Right-handed alpha
Helix 123	AN6	F	391	397	Right-handed alpha
Helix 124	AN7	F	409	414	Right-handed 310
Helix 125	AN8	F	438	456	Right-handed alpha

There are 23 sheets in PDB entry 5E58. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	70	first strand
Strand 2	A	73	79	anti-parallel
Strand 3	A	387	391	parallel
Strand 4	A	369	370	anti-parallel
Strand 5	A	97	98	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	377	first strand
Strand 2	A	380	382	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	460	first strand
Strand 2	A	487	490	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	475	first strand
Strand 2	A	479	480	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	70	first strand
Strand 2	B	73	78	anti-parallel
Strand 3	B	387	390	parallel
Strand 4	B	369	370	anti-parallel
Strand 5	B	97	98	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	377	first strand
Strand 2	B	380	382	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	460	first strand
Strand 2	B	487	490	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	475	first strand
Strand 2	B	479	480	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	70	first strand
Strand 2	C	73	78	anti-parallel
Strand 3	C	387	390	parallel
Strand 4	C	369	370	anti-parallel
Strand 5	C	97	98	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	377	first strand
Strand 2	C	380	382	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	460	first strand
Strand 2	C	487	490	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	70	first strand
Strand 2	D	73	78	anti-parallel
Strand 3	D	387	390	parallel
Strand 4	D	369	370	anti-parallel
Strand 5	D	97	98	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	375	377	first strand
Strand 2	D	380	382	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	457	460	first strand
Strand 2	D	487	490	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	474	475	first strand
Strand 2	D	479	480	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	70	first strand
Strand 2	E	73	78	anti-parallel
Strand 3	E	387	390	parallel
Strand 4	E	369	370	anti-parallel
Strand 5	E	97	98	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	375	377	first strand
Strand 2	E	380	382	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	457	460	first strand
Strand 2	E	487	490	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	474	475	first strand
Strand 2	E	479	480	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	70	first strand
Strand 2	F	73	78	anti-parallel
Strand 3	F	387	390	parallel
Strand 4	F	369	370	anti-parallel
Strand 5	F	97	98	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	165	first strand
Strand 2	F	486	490	anti-parallel
Strand 3	F	457	460	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	375	377	first strand
Strand 2	F	380	382	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	472	475	first strand
Strand 2	F	479	481	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E58

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E58