Analysis of interatomic Contacts of Structural Units in PDB entry:
5E5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E5B entry

There is 1 chain in PDB entry 5E5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LEU 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5E5B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 24Right-handed alpha
Helix 2
AA2
A
25 29Right-handed 310
Helix 3
AA3
A
47 58Right-handed alpha
Helix 4
AA4
A
78 90Right-handed alpha
Helix 5
AA5
A
94 100Right-handed 310
Helix 6
AA6
A
114 128Right-handed alpha
Helix 7
AA7
A
144 156Right-handed alpha
Helix 8
AA8
A
164 174Right-handed alpha
Helix 9
AA9
A
176 197Right-handed alpha
Helix 10
AB1
A
197 208Right-handed alpha
Helix 11
AB2
A
213 225Right-handed alpha
Helix 12
AB3
A
226 231Right-handed 310
Helix 13
AB4
A
235 237Right-handed 310
Helix 14
AB5
A
295 316Right-handed alpha
Helix 15
AB6
A
321 337Right-handed alpha
Helix 16
AB7
A
338 341Right-handed 310
Helix 17
AB8
A
393 397Right-handed alpha
Helix 18
AB9
A
424 428Right-handed alpha
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There are 4 sheets in PDB entry 5E5B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 107first strand
Strand 2
A
73 77parallel
Strand 3
A
64 68anti-parallel
Strand 4
A
33 38anti-parallel
Strand 5
A
133 136parallel
Strand 6
A
160 163parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 241first strand
Strand 2
A
277 279anti-parallel
Strand 3
A
282 283anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 248first strand
Strand 2
A
270 275anti-parallel
Strand 3
A
286 292anti-parallel
Strand 4
A
429 430parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 362first strand
Strand 2
A
349 351anti-parallel
Strand 3
A
376 387anti-parallel
Strand 4
A
398 408anti-parallel
Strand 5
A
416 417anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il