Analysis of interatomic Contacts of Structural Units in PDB entry:
5E5H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E5H entry

There are 4 chains in PDB entry 5E5H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	VAL 14
A	PRO 16	HIS 512
B	THR 2	VAL 14
B	PRO 16	SER 505

There are 46 helices in PDB entry 5E5H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	14	Right-handed 310
Helix 2	AA2	A	16	22	Right-handed alpha
Helix 3	AA3	A	42	58	Right-handed alpha
Helix 4	AA4	A	76	83	Right-handed alpha
Helix 5	AA5	A	95	104	Right-handed alpha
Helix 6	AA6	A	113	115	Right-handed 310
Helix 7	AA7	A	116	124	Right-handed alpha
Helix 8	AA8	A	153	161	Right-handed alpha
Helix 9	AA9	A	173	177	Right-handed 310
Helix 10	AB1	A	213	215	Right-handed 310
Helix 11	AB2	A	236	256	Right-handed alpha
Helix 12	AB3	A	271	284	Right-handed alpha
Helix 13	AB4	A	298	307	Right-handed alpha
Helix 14	AB5	A	320	330	Right-handed alpha
Helix 15	AB6	A	330	336	Right-handed alpha
Helix 16	AB7	A	342	347	Right-handed alpha
Helix 17	AB8	A	348	356	Right-handed alpha
Helix 18	AB9	A	378	380	Right-handed 310
Helix 19	AC1	A	388	396	Right-handed alpha
Helix 20	AC2	A	425	429	Right-handed 310
Helix 21	AC3	A	445	457	Right-handed alpha
Helix 22	AC4	A	462	477	Right-handed alpha
Helix 23	AC5	A	490	500	Right-handed alpha
Helix 24	AC6	B	8	14	Right-handed 310
Helix 25	AC7	B	16	22	Right-handed alpha
Helix 26	AC8	B	42	59	Right-handed alpha
Helix 27	AC9	B	76	83	Right-handed alpha
Helix 28	AD1	B	95	104	Right-handed alpha
Helix 29	AD2	B	113	115	Right-handed 310
Helix 30	AD3	B	116	124	Right-handed alpha
Helix 31	AD4	B	153	161	Right-handed alpha
Helix 32	AD5	B	173	177	Right-handed 310
Helix 33	AD6	B	213	215	Right-handed 310
Helix 34	AD7	B	236	256	Right-handed alpha
Helix 35	AD8	B	271	283	Right-handed alpha
Helix 36	AD9	B	297	306	Right-handed alpha
Helix 37	AE1	B	320	330	Right-handed alpha
Helix 38	AE2	B	330	335	Right-handed alpha
Helix 39	AE3	B	342	347	Right-handed alpha
Helix 40	AE4	B	348	356	Right-handed alpha
Helix 41	AE5	B	378	380	Right-handed 310
Helix 42	AE6	B	388	396	Right-handed alpha
Helix 43	AE7	B	425	429	Right-handed 310
Helix 44	AE8	B	445	458	Right-handed alpha
Helix 45	AE9	B	462	477	Right-handed alpha
Helix 46	AF1	B	490	500	Right-handed alpha

There are 16 sheets in PDB entry 5E5H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	86	90	parallel
Strand 3	A	64	67	parallel
Strand 4	A	29	32	parallel
Strand 5	A	131	136	parallel
Strand 6	A	163	169	parallel
Strand 7	A	217	223	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	139	first strand
Strand 2	A	145	146	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	181	first strand
Strand 2	A	338	341	parallel
Strand 3	A	309	314	parallel
Strand 4	A	289	292	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	268	first strand
Strand 2	A	358	361	parallel
Strand 3	A	398	402	parallel
Strand 4	A	431	434	parallel
Strand 5	A	437	440	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	297	first strand
Strand 2	A	316	318	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	373	first strand
Strand 2	A	365	367	anti-parallel
Strand 3	A	415	416	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	377	first strand
Strand 2	A	381	382	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	407	first strand
Strand 2	A	412	413	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	86	90	parallel
Strand 3	B	64	67	parallel
Strand 4	B	29	32	parallel
Strand 5	B	131	136	parallel
Strand 6	B	163	169	parallel
Strand 7	B	217	223	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	139	first strand
Strand 2	B	145	146	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	181	first strand
Strand 2	B	338	341	parallel
Strand 3	B	309	314	parallel
Strand 4	B	289	292	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	268	first strand
Strand 2	B	358	362	parallel
Strand 3	B	398	402	parallel
Strand 4	B	431	434	parallel
Strand 5	B	437	440	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	296	first strand
Strand 2	B	316	317	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	373	first strand
Strand 2	B	365	367	anti-parallel
Strand 3	B	415	416	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	377	first strand
Strand 2	B	381	382	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	407	first strand
Strand 2	B	412	413	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E5H

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E5H