Analysis of interatomic Contacts of Structural Units in PDB entry:
5E5N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E5N entry

There are 4 chains in PDB entry 5E5N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	PRO 591
B	ASP 3	PRO 591
C	ASP 3	PRO 591
D	ASP 3	PRO 591

There are 96 helices in PDB entry 5E5N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	29	Right-handed alpha
Helix 2	AA2	A	43	47	Right-handed 310
Helix 3	AA3	A	73	78	Right-handed 310
Helix 4	AA4	A	80	85	Right-handed alpha
Helix 5	AA5	A	88	106	Right-handed alpha
Helix 6	AA6	A	108	113	Right-handed alpha
Helix 7	AA7	A	126	133	Right-handed alpha
Helix 8	AA8	A	144	157	Right-handed alpha
Helix 9	AA9	A	167	169	Right-handed 310
Helix 10	AB1	A	170	185	Right-handed alpha
Helix 11	AB2	A	201	206	Right-handed alpha
Helix 12	AB3	A	244	250	Right-handed alpha
Helix 13	AB4	A	276	292	Right-handed alpha
Helix 14	AB5	A	294	298	Right-handed 310
Helix 15	AB6	A	310	325	Right-handed alpha
Helix 16	AB7	A	338	343	Right-handed alpha
Helix 17	AB8	A	345	347	Right-handed 310
Helix 18	AB9	A	348	363	Right-handed alpha
Helix 19	AC1	A	448	466	Right-handed alpha
Helix 20	AC2	A	470	481	Right-handed alpha
Helix 21	AC3	A	495	509	Right-handed alpha
Helix 22	AC4	A	523	533	Right-handed alpha
Helix 23	AC5	A	533	546	Right-handed alpha
Helix 24	AC6	A	548	559	Right-handed alpha
Helix 25	AC7	A	563	568	Right-handed 310
Helix 26	AC8	B	19	29	Right-handed alpha
Helix 27	AC9	B	43	48	Right-handed alpha
Helix 28	AD1	B	80	85	Right-handed alpha
Helix 29	AD2	B	88	106	Right-handed alpha
Helix 30	AD3	B	108	113	Right-handed alpha
Helix 31	AD4	B	126	132	Right-handed alpha
Helix 32	AD5	B	144	157	Right-handed alpha
Helix 33	AD6	B	167	169	Right-handed 310
Helix 34	AD7	B	170	185	Right-handed alpha
Helix 35	AD8	B	201	211	Right-handed alpha
Helix 36	AD9	B	244	250	Right-handed alpha
Helix 37	AE1	B	276	292	Right-handed alpha
Helix 38	AE2	B	294	298	Right-handed 310
Helix 39	AE3	B	310	325	Right-handed alpha
Helix 40	AE4	B	338	343	Right-handed alpha
Helix 41	AE5	B	345	347	Right-handed 310
Helix 42	AE6	B	348	363	Right-handed alpha
Helix 43	AE7	B	448	466	Right-handed alpha
Helix 44	AE8	B	470	481	Right-handed alpha
Helix 45	AE9	B	495	509	Right-handed alpha
Helix 46	AF1	B	523	533	Right-handed alpha
Helix 47	AF2	B	533	546	Right-handed alpha
Helix 48	AF3	B	548	559	Right-handed alpha
Helix 49	AF4	B	563	568	Right-handed 310
Helix 50	AF5	C	19	29	Right-handed alpha
Helix 51	AF6	C	80	85	Right-handed alpha
Helix 52	AF7	C	88	105	Right-handed alpha
Helix 53	AF8	C	108	113	Right-handed alpha
Helix 54	AF9	C	126	132	Right-handed alpha
Helix 55	AG1	C	144	157	Right-handed alpha
Helix 56	AG2	C	167	169	Right-handed 310
Helix 57	AG3	C	170	185	Right-handed alpha
Helix 58	AG4	C	201	205	Right-handed 310
Helix 59	AG5	C	244	250	Right-handed alpha
Helix 60	AG6	C	276	292	Right-handed alpha
Helix 61	AG7	C	294	298	Right-handed 310
Helix 62	AG8	C	312	325	Right-handed alpha
Helix 63	AG9	C	338	343	Right-handed alpha
Helix 64	AH1	C	345	347	Right-handed 310
Helix 65	AH2	C	348	363	Right-handed alpha
Helix 66	AH3	C	448	466	Right-handed alpha
Helix 67	AH4	C	470	481	Right-handed alpha
Helix 68	AH5	C	495	509	Right-handed alpha
Helix 69	AH6	C	523	532	Right-handed alpha
Helix 70	AH7	C	533	544	Right-handed alpha
Helix 71	AH8	C	548	559	Right-handed alpha
Helix 72	AH9	C	563	568	Right-handed 310
Helix 73	AI1	D	19	29	Right-handed alpha
Helix 74	AI2	D	73	78	Right-handed 310
Helix 75	AI3	D	80	85	Right-handed alpha
Helix 76	AI4	D	88	105	Right-handed alpha
Helix 77	AI5	D	108	113	Right-handed alpha
Helix 78	AI6	D	126	132	Right-handed alpha
Helix 79	AI7	D	144	157	Right-handed alpha
Helix 80	AI8	D	167	169	Right-handed 310
Helix 81	AI9	D	170	185	Right-handed alpha
Helix 82	AJ1	D	244	250	Right-handed alpha
Helix 83	AJ2	D	276	292	Right-handed alpha
Helix 84	AJ3	D	294	298	Right-handed 310
Helix 85	AJ4	D	312	325	Right-handed alpha
Helix 86	AJ5	D	338	343	Right-handed alpha
Helix 87	AJ6	D	345	347	Right-handed 310
Helix 88	AJ7	D	348	363	Right-handed alpha
Helix 89	AJ8	D	448	466	Right-handed alpha
Helix 90	AJ9	D	470	481	Right-handed alpha
Helix 91	AK1	D	495	509	Right-handed alpha
Helix 92	AK2	D	521	523	Right-handed 310
Helix 93	AK3	D	528	533	Right-handed alpha
Helix 94	AK4	D	533	546	Right-handed alpha
Helix 95	AK5	D	548	559	Right-handed alpha
Helix 96	AK6	D	563	568	Right-handed 310

There are 20 sheets in PDB entry 5E5N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	165	first strand
Strand 2	A	117	122	parallel
Strand 3	A	190	197	parallel
Strand 4	A	235	243	anti-parallel
Strand 5	A	5	13	anti-parallel
Strand 6	A	256	265	anti-parallel
Strand 7	A	415	422	anti-parallel
Strand 8	A	404	410	anti-parallel
Strand 9	A	300	302	parallel
Strand 10	A	333	336	parallel
Strand 11	A	386	388	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	62	64	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	586	587	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	366	first strand
Strand 2	A	393	394	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	446	first strand
Strand 2	A	487	493	anti-parallel
Strand 3	A	515	519	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	165	first strand
Strand 2	B	117	122	parallel
Strand 3	B	190	197	parallel
Strand 4	B	235	243	anti-parallel
Strand 5	B	5	13	anti-parallel
Strand 6	B	256	265	anti-parallel
Strand 7	B	415	422	anti-parallel
Strand 8	B	404	410	anti-parallel
Strand 9	B	300	302	parallel
Strand 10	B	333	336	parallel
Strand 11	B	386	388	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	36	first strand
Strand 2	B	62	64	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	586	587	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	366	first strand
Strand 2	B	393	394	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	446	first strand
Strand 2	B	487	493	anti-parallel
Strand 3	B	515	519	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	165	first strand
Strand 2	C	117	122	parallel
Strand 3	C	190	197	parallel
Strand 4	C	235	243	anti-parallel
Strand 5	C	5	13	anti-parallel
Strand 6	C	256	265	anti-parallel
Strand 7	C	415	422	anti-parallel
Strand 8	C	404	410	anti-parallel
Strand 9	C	300	302	parallel
Strand 10	C	333	336	parallel
Strand 11	C	386	388	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	36	first strand
Strand 2	C	62	64	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	586	587	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	366	first strand
Strand 2	C	393	394	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	446	first strand
Strand 2	C	487	493	anti-parallel
Strand 3	C	515	519	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	165	first strand
Strand 2	D	117	122	parallel
Strand 3	D	190	197	parallel
Strand 4	D	235	243	anti-parallel
Strand 5	D	5	13	anti-parallel
Strand 6	D	256	265	anti-parallel
Strand 7	D	415	422	anti-parallel
Strand 8	D	404	410	anti-parallel
Strand 9	D	300	302	parallel
Strand 10	D	333	336	parallel
Strand 11	D	386	388	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	36	first strand
Strand 2	D	62	64	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	586	587	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	366	first strand
Strand 2	D	393	394	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	446	first strand
Strand 2	D	487	493	anti-parallel
Strand 3	D	515	519	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E5N

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E5N