Analysis of interatomic Contacts of Structural Units in PDB entry:
5E5S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E5S entry

There are 4 chains in PDB entry 5E5S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4GLY 300
B
 C 1 C 25
C
 G 1 T 15
D
 C 16 G 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5E5S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 20Right-handed alpha
Helix 2
AA2
A
51 62Right-handed alpha
Helix 3
AA3
A
82 89Right-handed alpha
Helix 4
AA4
A
89 97Right-handed alpha
Helix 5
AA5
A
102 119Right-handed alpha
Helix 6
AA6
A
120 123Right-handed 310
Helix 7
AA7
A
124 136Right-handed alpha
Helix 8
AA8
A
143 150Right-handed alpha
Helix 9
AA9
A
168 179Right-handed alpha
Helix 10
AB1
A
207 209Right-handed 310
Helix 11
AB2
A
210 222Right-handed alpha
Helix 12
AB3
A
241 248Right-handed alpha
Helix 13
AB4
A
248 256Right-handed alpha
Helix 14
AB5
A
261 278Right-handed alpha
Helix 15
AB6
A
279 282Right-handed 310
Helix 16
AB7
A
283 296Right-handed alpha
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There are 2 sheets in PDB entry 5E5S. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 29first strand
Strand 2
A
37 48anti-parallel
Strand 3
A
75 80anti-parallel
Strand 4
A
67 72anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 188first strand
Strand 2
A
196 206anti-parallel
Strand 3
A
235 239anti-parallel
Strand 4
A
225 228anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il