Analysis of interatomic Contacts of Structural Units in PDB entry:
5E62

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E62 entry

There are 4 chains in PDB entry 5E62 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	SER 429
B	PHE 9	PHE 157
C	GLU 3	SER 429
D	PHE 9	PHE 157

There are 30 helices in PDB entry 5E62. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	60	Right-handed 310
Helix 2	AA2	A	73	78	Right-handed alpha
Helix 3	AA3	A	87	94	Right-handed alpha
Helix 4	AA4	A	119	123	Right-handed 310
Helix 5	AA5	A	130	148	Right-handed alpha
Helix 6	AA6	A	172	176	Right-handed 310
Helix 7	AA7	A	233	238	Right-handed alpha
Helix 8	AA8	A	330	338	Right-handed alpha
Helix 9	AA9	A	362	369	Right-handed alpha
Helix 10	AB1	A	370	373	Right-handed 310
Helix 11	AB2	A	409	413	Right-handed 310
Helix 12	AB3	B	46	59	Right-handed alpha
Helix 13	AB4	B	60	69	Right-handed alpha
Helix 14	AB5	B	82	127	Right-handed alpha
Helix 15	AB6	B	148	155	Right-handed alpha
Helix 16	AB7	C	57	60	Right-handed 310
Helix 17	AB8	C	73	78	Right-handed alpha
Helix 18	AB9	C	87	94	Right-handed alpha
Helix 19	AC1	C	119	123	Right-handed 310
Helix 20	AC2	C	130	148	Right-handed alpha
Helix 21	AC3	C	172	176	Right-handed 310
Helix 22	AC4	C	233	238	Right-handed alpha
Helix 23	AC5	C	330	338	Right-handed alpha
Helix 24	AC6	C	361	369	Right-handed alpha
Helix 25	AC7	C	370	373	Right-handed 310
Helix 26	AC8	C	409	413	Right-handed 310
Helix 27	AC9	D	46	59	Right-handed alpha
Helix 28	AD1	D	60	69	Right-handed alpha
Helix 29	AD2	D	82	127	Right-handed alpha
Helix 30	AD3	D	148	155	Right-handed alpha

There are 23 sheets in PDB entry 5E62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	16	first strand
Strand 2	A	4	11	parallel
Strand 3	B	24	29	anti-parallel
Strand 4	B	39	40	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	16	first strand
Strand 2	A	4	11	parallel
Strand 3	B	138	140	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	24	32	anti-parallel
Strand 3	A	415	424	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	82	first strand
Strand 2	A	51	55	parallel
Strand 3	A	109	113	parallel
Strand 4	A	315	318	parallel
Strand 5	A	342	345	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	151	155	anti-parallel
Strand 3	A	304	307	anti-parallel
Strand 4	A	221	225	anti-parallel
Strand 5	A	281	284	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	162	first strand
Strand 2	A	204	210	anti-parallel
Strand 3	A	287	293	anti-parallel
Strand 4	A	246	250	anti-parallel
Strand 5	A	256	261	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	169	first strand
Strand 2	A	184	187	anti-parallel
Strand 3	A	297	300	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	217	218	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	230	first strand
Strand 2	A	276	278	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	356	first strand
Strand 2	A	359	361	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	385	first strand
Strand 2	A	378	380	anti-parallel
Strand 3	A	400	403	anti-parallel
Strand 4	B	73	76	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	392	first strand
Strand 2	A	406	407	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	16	first strand
Strand 2	C	4	11	parallel
Strand 3	D	24	29	anti-parallel
Strand 4	D	39	40	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	16	first strand
Strand 2	C	4	11	parallel
Strand 3	D	138	140	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	18	first strand
Strand 2	C	24	32	anti-parallel
Strand 3	C	415	424	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	82	first strand
Strand 2	C	51	55	parallel
Strand 3	C	109	113	parallel
Strand 4	C	315	318	parallel
Strand 5	C	342	345	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	106	first strand
Strand 2	C	151	155	anti-parallel
Strand 3	C	304	307	anti-parallel
Strand 4	C	221	225	anti-parallel
Strand 5	C	281	284	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	162	first strand
Strand 2	C	204	210	anti-parallel
Strand 3	C	287	293	anti-parallel
Strand 4	C	246	250	anti-parallel
Strand 5	C	256	261	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	169	first strand
Strand 2	C	184	187	anti-parallel
Strand 3	C	297	300	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	214	first strand
Strand 2	C	217	218	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	230	first strand
Strand 2	C	276	278	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	383	386	first strand
Strand 2	C	376	380	anti-parallel
Strand 3	C	400	403	anti-parallel
Strand 4	D	73	76	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	392	first strand
Strand 2	C	406	407	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E62

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E62