Analysis of interatomic Contacts of Structural Units in PDB entry:
5E66


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E66 entry

There are 2 chains in PDB entry 5E66 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3SER 429
B
 PHE 9PHE 157
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5E66. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 78Right-handed alpha
Helix 2
AA2
A
87 94Right-handed alpha
Helix 3
AA3
A
119 123Right-handed 310
Helix 4
AA4
A
130 147Right-handed alpha
Helix 5
AA5
A
172 176Right-handed 310
Helix 6
AA6
A
233 239Right-handed alpha
Helix 7
AA7
A
330 338Right-handed alpha
Helix 8
AA8
A
361 368Right-handed alpha
Helix 9
AA9
A
369 373Right-handed 310
Helix 10
AB1
A
409 413Right-handed 310
Helix 11
AB2
B
46 57Right-handed alpha
Helix 12
AB3
B
60 70Right-handed alpha
Helix 13
AB4
B
82 114Right-handed alpha
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There are 13 sheets in PDB entry 5E66. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
B
139 140anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 16first strand
Strand 2
A
9 11parallel
Strand 3
B
24 25anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
24 32anti-parallel
Strand 3
A
415 424anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
51 55parallel
Strand 3
A
109 113parallel
Strand 4
A
315 318parallel
Strand 5
A
344 345parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
A
151 155anti-parallel
Strand 3
A
304 307anti-parallel
Strand 4
A
221 225anti-parallel
Strand 5
A
281 284anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 162first strand
Strand 2
A
204 210anti-parallel
Strand 3
A
287 293anti-parallel
Strand 4
A
246 250anti-parallel
Strand 5
A
256 261anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
184 187anti-parallel
Strand 3
A
297 300anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 214first strand
Strand 2
A
217 218anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
276 278anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 380first strand
Strand 2
A
383 385anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 392first strand
Strand 2
A
406 407parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
B
74 76anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 29first strand
Strand 2
B
39 40anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il