Analysis of interatomic Contacts of Structural Units in PDB entry:
5E68


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E68 entry

There are 4 chains in PDB entry 5E68 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3GLY 82
A
 ARG 84LEU 169
B
 LEU 3GLY 82
B
 ARG 84HIS 174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5E68. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 69Right-handed alpha
Helix 2
AA2
A
96 113Right-handed alpha
Helix 3
AA3
A
116 120Right-handed 310
Helix 4
AA4
A
135 150Right-handed alpha
Helix 5
AA5
A
155 160Right-handed alpha
Helix 6
AA6
A
162 169Right-handed alpha
Helix 7
AA7
B
49 69Right-handed alpha
Helix 8
AA8
B
96 113Right-handed alpha
Helix 9
AA9
B
116 120Right-handed 310
Helix 10
AB1
B
135 150Right-handed alpha
Helix 11
AB2
B
155 160Right-handed alpha
Helix 12
AB3
B
164 171Right-handed alpha
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There are 3 sheets in PDB entry 5E68. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 80first strand
Strand 2
A
86 92anti-parallel
Strand 3
A
32 39anti-parallel
Strand 4
A
18 26anti-parallel
Strand 5
A
152 153parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
18 26anti-parallel
Strand 3
B
32 39anti-parallel
Strand 4
B
86 92anti-parallel
Strand 5
B
74 80anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
18 26anti-parallel
Strand 3
B
152 153parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il