Analysis of interatomic Contacts of Structural Units in PDB entry:
5E6R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E6R entry

There are 2 chains in PDB entry 5E6R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 1	VAL 590
B	GLN 1	CYS 459

There are 32 helices in PDB entry 5E6R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	8	Right-handed 310
Helix 2	AA2	A	143	162	Right-handed alpha
Helix 3	AA3	A	182	188	Right-handed alpha
Helix 4	AA4	A	191	196	Right-handed alpha
Helix 5	AA5	A	207	219	Right-handed alpha
Helix 6	AA6	A	221	225	Right-handed 310
Helix 7	AA7	A	248	252	Right-handed 310
Helix 8	AA8	A	263	266	Right-handed 310
Helix 9	AA9	A	267	272	Right-handed alpha
Helix 10	AB1	A	273	278	Right-handed 310
Helix 11	AB2	A	281	285	Right-handed alpha
Helix 12	AB3	A	293	298	Right-handed alpha
Helix 13	AB4	A	298	305	Right-handed alpha
Helix 14	AB5	A	344	349	Right-handed alpha
Helix 15	AB6	A	371	375	Right-handed 310
Helix 16	AB7	A	401	405	Right-handed 310
Helix 17	AB8	A	546	550	Right-handed alpha
Helix 18	AB9	B	10	18	Right-handed alpha
Helix 19	AC1	B	36	38	Right-handed 310
Helix 20	AC2	B	42	49	Right-handed alpha
Helix 21	AC3	B	114	116	Right-handed 310
Helix 22	AC4	B	117	125	Right-handed alpha
Helix 23	AC5	B	127	139	Right-handed alpha
Helix 24	AC6	B	161	167	Right-handed alpha
Helix 25	AC7	B	191	201	Right-handed alpha
Helix 26	AC8	B	213	224	Right-handed alpha
Helix 27	AC9	B	224	229	Right-handed alpha
Helix 28	AD1	B	249	255	Right-handed 310
Helix 29	AD2	B	273	276	Right-handed 310
Helix 30	AD3	B	281	292	Right-handed alpha
Helix 31	AD4	B	304	315	Right-handed alpha
Helix 32	AD5	B	329	343	Right-handed alpha

There are 14 sheets in PDB entry 5E6R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	581	586	anti-parallel
Strand 3	A	573	578	anti-parallel
Strand 4	A	560	563	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	27	first strand
Strand 2	A	30	35	anti-parallel
Strand 3	A	44	49	anti-parallel
Strand 4	A	55	57	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	76	first strand
Strand 2	A	83	94	anti-parallel
Strand 3	A	97	107	anti-parallel
Strand 4	A	115	118	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	181	first strand
Strand 2	A	166	173	anti-parallel
Strand 3	A	130	137	parallel
Strand 4	A	231	238	parallel
Strand 5	A	255	261	parallel
Strand 6	A	286	289	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	334	first strand
Strand 2	A	337	342	anti-parallel
Strand 3	A	352	355	anti-parallel
Strand 4	A	362	365	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	386	first strand
Strand 2	A	394	399	anti-parallel
Strand 3	A	407	412	anti-parallel
Strand 4	A	421	427	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	442	first strand
Strand 2	A	452	456	anti-parallel
Strand 3	A	469	474	anti-parallel
Strand 4	A	479	485	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	500	502	first strand
Strand 2	A	514	518	anti-parallel
Strand 3	A	525	529	anti-parallel
Strand 4	A	542	545	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	B	22	24	anti-parallel
Strand 3	B	56	57	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	66	first strand
Strand 2	B	80	85	anti-parallel
Strand 3	B	414	421	parallel
Strand 4	B	402	408	anti-parallel
Strand 5	B	344	349	anti-parallel
Strand 6	B	376	379	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	387	395	anti-parallel
Strand 4	B	356	364	anti-parallel
Strand 5	B	368	373	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	189	first strand
Strand 2	B	143	149	anti-parallel
Strand 3	B	105	112	parallel
Strand 4	B	234	241	parallel
Strand 5	B	294	300	parallel
Strand 6	B	319	322	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	270	271	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	444	first strand
Strand 2	B	447	450	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E6R

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E6R