Analysis of interatomic Contacts of Structural Units in PDB entry:
5E6T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E6T entry

There are 2 chains in PDB entry 5E6T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 220VAL 507
B
PHE 224VAL 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5E6T. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
230 234Right-handed 310
Helix 2
AA2
A
276 280Right-handed 310
Helix 3
AA3
A
348 351Right-handed 310
Helix 4
AA4
A
431 442Right-handed alpha
Helix 5
AA5
B
230 234Right-handed 310
Helix 6
AA6
B
276 280Right-handed 310
Helix 7
AA7
B
349 351Right-handed 310
Helix 8
AA8
B
431 442Right-handed alpha
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There are 10 sheets in PDB entry 5E6T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
426 428first strand
Strand 2
A
410 413anti-parallel
Strand 3
A
245 249anti-parallel
Strand 4
A
483 486anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
255 256first strand
Strand 2
A
399 400anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
334 340first strand
Strand 2
A
323 330anti-parallel
Strand 3
A
365 373anti-parallel
Strand 4
A
282 287anti-parallel
Strand 5
A
294 298anti-parallel
Strand 6
A
353 355anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
334 340first strand
Strand 2
A
323 330anti-parallel
Strand 3
A
365 373anti-parallel
Strand 4
A
417 418parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
406 408first strand
Strand 2
A
473 477anti-parallel
Strand 3
A
462 469anti-parallel
Strand 4
A
449 455anti-parallel
Strand 5
A
491 498anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
426 428first strand
Strand 2
B
406 413anti-parallel
Strand 3
B
245 249anti-parallel
Strand 4
B
483 486anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
426 428first strand
Strand 2
B
406 413anti-parallel
Strand 3
B
473 477anti-parallel
Strand 4
B
462 469anti-parallel
Strand 5
B
449 455anti-parallel
Strand 6
B
491 498anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
255 256first strand
Strand 2
B
399 400anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
334 340first strand
Strand 2
B
323 330anti-parallel
Strand 3
B
365 373anti-parallel
Strand 4
B
282 287anti-parallel
Strand 5
B
294 298anti-parallel
Strand 6
B
353 355anti-parallel
Strand 7
B
347 348anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
334 340first strand
Strand 2
B
323 330anti-parallel
Strand 3
B
365 373anti-parallel
Strand 4
B
417 418parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il