Analysis of interatomic Contacts of Structural Units in PDB entry:
5E6Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E6Y entry

There are 4 chains in PDB entry 5E6Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 117	GLU 728
B	THR 117	GLU 728
C	THR 117	GLU 728
D	THR 117	GLU 728

There are 88 helices in PDB entry 5E6Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	230	236	Right-handed alpha
Helix 2	AA2	A	264	280	Right-handed alpha
Helix 3	AA3	A	294	298	Right-handed 310
Helix 4	AA4	A	310	313	Right-handed 310
Helix 5	AA5	A	314	328	Right-handed alpha
Helix 6	AA6	A	379	396	Right-handed alpha
Helix 7	AA7	A	407	412	Right-handed alpha
Helix 8	AA8	A	432	450	Right-handed alpha
Helix 9	AA9	A	482	495	Right-handed alpha
Helix 10	AB1	A	496	503	Right-handed 310
Helix 11	AB2	A	504	509	Right-handed alpha
Helix 12	AB3	A	510	512	Right-handed 310
Helix 13	AB4	A	524	528	Right-handed 310
Helix 14	AB5	A	542	560	Right-handed alpha
Helix 15	AB6	A	585	590	Right-handed 310
Helix 16	AB7	A	594	611	Right-handed alpha
Helix 17	AB8	A	613	617	Right-handed 310
Helix 18	AB9	A	622	624	Right-handed 310
Helix 19	AC1	A	683	687	Right-handed 310
Helix 20	AC2	B	120	124	Right-handed 310
Helix 21	AC3	B	230	238	Right-handed alpha
Helix 22	AC4	B	249	253	Right-handed 310
Helix 23	AC5	B	264	280	Right-handed alpha
Helix 24	AC6	B	294	298	Right-handed 310
Helix 25	AC7	B	310	313	Right-handed 310
Helix 26	AC8	B	314	328	Right-handed alpha
Helix 27	AC9	B	379	397	Right-handed alpha
Helix 28	AD1	B	407	412	Right-handed alpha
Helix 29	AD2	B	432	450	Right-handed alpha
Helix 30	AD3	B	469	473	Right-handed 310
Helix 31	AD4	B	482	495	Right-handed alpha
Helix 32	AD5	B	499	503	Right-handed 310
Helix 33	AD6	B	504	513	Right-handed alpha
Helix 34	AD7	B	524	528	Right-handed 310
Helix 35	AD8	B	535	539	Right-handed 310
Helix 36	AD9	B	542	558	Right-handed alpha
Helix 37	AE1	B	585	590	Right-handed 310
Helix 38	AE2	B	594	613	Right-handed alpha
Helix 39	AE3	B	614	617	Right-handed 310
Helix 40	AE4	B	622	624	Right-handed 310
Helix 41	AE5	B	683	687	Right-handed 310
Helix 42	AE6	C	120	124	Right-handed 310
Helix 43	AE7	C	230	236	Right-handed alpha
Helix 44	AE8	C	264	279	Right-handed alpha
Helix 45	AE9	C	294	298	Right-handed 310
Helix 46	AF1	C	310	313	Right-handed 310
Helix 47	AF2	C	314	328	Right-handed alpha
Helix 48	AF3	C	350	354	Right-handed 310
Helix 49	AF4	C	379	398	Right-handed alpha
Helix 50	AF5	C	406	411	Right-handed alpha
Helix 51	AF6	C	432	450	Right-handed alpha
Helix 52	AF7	C	469	473	Right-handed 310
Helix 53	AF8	C	482	495	Right-handed alpha
Helix 54	AF9	C	496	503	Right-handed 310
Helix 55	AG1	C	504	509	Right-handed alpha
Helix 56	AG2	C	510	513	Right-handed 310
Helix 57	AG3	C	524	528	Right-handed 310
Helix 58	AG4	C	535	539	Right-handed 310
Helix 59	AG5	C	542	560	Right-handed alpha
Helix 60	AG6	C	569	573	Right-handed 310
Helix 61	AG7	C	585	590	Right-handed 310
Helix 62	AG8	C	594	613	Right-handed alpha
Helix 63	AG9	C	614	617	Right-handed 310
Helix 64	AH1	C	622	624	Right-handed 310
Helix 65	AH2	C	683	687	Right-handed 310
Helix 66	AH3	D	120	124	Right-handed 310
Helix 67	AH4	D	156	158	Right-handed 310
Helix 68	AH5	D	230	238	Right-handed alpha
Helix 69	AH6	D	264	279	Right-handed alpha
Helix 70	AH7	D	294	298	Right-handed 310
Helix 71	AH8	D	310	313	Right-handed 310
Helix 72	AH9	D	314	328	Right-handed alpha
Helix 73	AI1	D	379	398	Right-handed alpha
Helix 74	AI2	D	406	412	Right-handed alpha
Helix 75	AI3	D	432	449	Right-handed alpha
Helix 76	AI4	D	469	473	Right-handed 310
Helix 77	AI5	D	482	495	Right-handed alpha
Helix 78	AI6	D	496	501	Right-handed alpha
Helix 79	AI7	D	504	514	Right-handed alpha
Helix 80	AI8	D	515	517	Right-handed 310
Helix 81	AI9	D	524	528	Right-handed 310
Helix 82	AJ1	D	535	539	Right-handed 310
Helix 83	AJ2	D	542	560	Right-handed alpha
Helix 84	AJ3	D	585	590	Right-handed 310
Helix 85	AJ4	D	594	613	Right-handed alpha
Helix 86	AJ5	D	614	617	Right-handed 310
Helix 87	AJ6	D	622	624	Right-handed 310
Helix 88	AJ7	D	683	687	Right-handed 310

There are 29 sheets in PDB entry 5E6Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	140	141	anti-parallel
Strand 3	A	176	177	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	136	137	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	190	193	anti-parallel
Strand 3	A	199	200	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	218	219	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	248	first strand
Strand 2	A	283	286	parallel
Strand 3	A	331	336	parallel
Strand 4	A	401	404	parallel
Strand 5	A	454	457	parallel
Strand 6	A	479	481	parallel
Strand 7	A	519	523	parallel
Strand 8	A	563	567	parallel
Strand 9	A	244	248	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	304	308	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	626	630	first strand
Strand 2	A	638	644	anti-parallel
Strand 3	A	650	656	anti-parallel
Strand 4	A	719	725	anti-parallel
Strand 5	A	674	680	anti-parallel
Strand 6	A	697	698	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	662	669	first strand
Strand 2	A	709	715	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	135	143	anti-parallel
Strand 3	B	174	180	anti-parallel
Strand 4	B	167	168	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	154	first strand
Strand 2	B	187	193	anti-parallel
Strand 3	B	199	202	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	154	first strand
Strand 2	B	187	193	anti-parallel
Strand 3	B	218	219	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	248	first strand
Strand 2	B	283	286	parallel
Strand 3	B	331	336	parallel
Strand 4	B	401	404	parallel
Strand 5	B	454	457	parallel
Strand 6	B	479	481	parallel
Strand 7	B	519	523	parallel
Strand 8	B	563	567	parallel
Strand 9	B	244	248	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	291	first strand
Strand 2	B	304	308	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	626	630	first strand
Strand 2	B	638	644	anti-parallel
Strand 3	B	650	656	anti-parallel
Strand 4	B	719	726	anti-parallel
Strand 5	B	674	680	anti-parallel
Strand 6	B	697	698	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	662	669	first strand
Strand 2	B	709	715	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	132	first strand
Strand 2	C	135	143	anti-parallel
Strand 3	C	174	180	anti-parallel
Strand 4	C	167	168	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	154	first strand
Strand 2	C	187	193	anti-parallel
Strand 3	C	199	202	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	154	first strand
Strand 2	C	187	193	anti-parallel
Strand 3	C	218	219	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	248	first strand
Strand 2	C	283	286	parallel
Strand 3	C	331	336	parallel
Strand 4	C	401	404	parallel
Strand 5	C	454	457	parallel
Strand 6	C	479	481	parallel
Strand 7	C	519	523	parallel
Strand 8	C	563	567	parallel
Strand 9	C	244	248	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	291	first strand
Strand 2	C	304	308	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	626	633	first strand
Strand 2	C	638	644	anti-parallel
Strand 3	C	650	656	anti-parallel
Strand 4	C	719	725	anti-parallel
Strand 5	C	674	680	anti-parallel
Strand 6	C	697	698	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	662	669	first strand
Strand 2	C	709	715	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	132	first strand
Strand 2	D	135	143	anti-parallel
Strand 3	D	174	180	anti-parallel
Strand 4	D	167	169	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	154	first strand
Strand 2	D	187	193	anti-parallel
Strand 3	D	199	202	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	154	first strand
Strand 2	D	187	193	anti-parallel
Strand 3	D	218	219	anti-parallel

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There are 9 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	248	first strand
Strand 2	D	283	286	parallel
Strand 3	D	331	336	parallel
Strand 4	D	401	404	parallel
Strand 5	D	454	457	parallel
Strand 6	D	479	481	parallel
Strand 7	D	519	523	parallel
Strand 8	D	563	567	parallel
Strand 9	D	244	248	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	290	291	first strand
Strand 2	D	304	308	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	626	630	first strand
Strand 2	D	638	644	anti-parallel
Strand 3	D	650	656	anti-parallel
Strand 4	D	719	726	anti-parallel
Strand 5	D	674	680	anti-parallel
Strand 6	D	697	698	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	662	668	first strand
Strand 2	D	710	715	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E6Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E6Y