Analysis of interatomic Contacts of Structural Units in PDB entry:
5E72


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E72 entry

There is 1 chain in PDB entry 5E72 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5E72. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 26Right-handed alpha
Helix 2
AA2
A
42 44Right-handed 310
Helix 3
AA3
A
45 50Right-handed alpha
Helix 4
AA4
A
67 77Right-handed alpha
Helix 5
AA5
A
102 113Right-handed alpha
Helix 6
AA6
A
145 151Right-handed alpha
Helix 7
AA7
A
152 157Right-handed 310
Helix 8
AA8
A
166 177Right-handed alpha
Helix 9
AA9
A
191 200Right-handed alpha
Helix 10
AB1
A
210 224Right-handed alpha
Helix 11
AB2
A
235 237Right-handed 310
Helix 12
AB3
A
238 243Right-handed alpha
Helix 13
AB4
A
267 282Right-handed alpha
Helix 14
AB5
A
298 306Right-handed alpha
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There are 3 sheets in PDB entry 5E72. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 33first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
2 6anti-parallel
Strand 4
A
55 65anti-parallel
Strand 5
A
135 143anti-parallel
Strand 6
A
125 131anti-parallel
Strand 7
A
86 92parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
A
203 208parallel
Strand 3
A
229 233parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 253first strand
Strand 2
A
283 294parallel
Strand 3
A
322 330anti-parallel
Strand 4
A
309 319anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il