Analysis of interatomic Contacts of Structural Units in PDB entry:
5E7F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E7F entry

There are 6 chains in PDB entry 5E7F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	HIS 128
B	GLN 3	SER 127
C	GLN 3	HIS 131
G	ASP 47	ALA 174
H	ASP 47	ALA 174
I	ASP 47	ALA 174

There are 12 helices in PDB entry 5E7F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	75	77	Right-handed 310
Helix 2	AA2	A	88	92	Right-handed 310
Helix 3	AA3	A	108	113	Right-handed alpha
Helix 4	AA4	B	75	77	Right-handed 310
Helix 5	AA5	B	88	92	Right-handed 310
Helix 6	AA6	B	108	113	Right-handed alpha
Helix 7	AA7	C	75	77	Right-handed 310
Helix 8	AA8	C	88	92	Right-handed 310
Helix 9	AA9	C	108	113	Right-handed alpha
Helix 10	AB1	G	49	59	Right-handed alpha
Helix 11	AB2	H	49	59	Right-handed alpha
Helix 12	AB3	I	49	59	Right-handed alpha

There are 18 sheets in PDB entry 5E7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	9	first strand
Strand 2	A	20	27	anti-parallel
Strand 3	A	79	84	anti-parallel
Strand 4	A	69	74	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	121	126	parallel
Strand 3	A	93	100	anti-parallel
Strand 4	A	35	41	anti-parallel
Strand 5	A	48	53	anti-parallel
Strand 6	A	59	61	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	9	first strand
Strand 2	B	20	27	anti-parallel
Strand 3	B	79	84	anti-parallel
Strand 4	B	69	74	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	15	first strand
Strand 2	B	121	126	parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	35	41	anti-parallel
Strand 5	B	48	53	anti-parallel
Strand 6	B	59	61	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	9	first strand
Strand 2	C	20	27	anti-parallel
Strand 3	C	79	84	anti-parallel
Strand 4	C	69	74	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	121	126	parallel
Strand 3	C	93	100	anti-parallel
Strand 4	C	35	41	anti-parallel
Strand 5	C	48	53	anti-parallel
Strand 6	C	59	61	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	68	first strand
Strand 2	G	158	172	anti-parallel
Strand 3	G	84	96	anti-parallel
Strand 4	G	134	141	anti-parallel
Strand 5	G	113	118	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	68	first strand
Strand 2	G	158	172	anti-parallel
Strand 3	G	84	96	anti-parallel
Strand 4	G	130	131	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	79	first strand
Strand 2	G	146	149	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	122	first strand
Strand 2	G	102	106	anti-parallel
Strand 3	G	151	156	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	64	68	first strand
Strand 2	H	158	172	anti-parallel
Strand 3	H	84	96	anti-parallel
Strand 4	H	134	141	anti-parallel
Strand 5	H	113	118	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	64	68	first strand
Strand 2	H	158	172	anti-parallel
Strand 3	H	84	96	anti-parallel
Strand 4	H	130	131	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	79	first strand
Strand 2	H	146	149	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	122	first strand
Strand 2	H	102	106	anti-parallel
Strand 3	H	151	156	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	64	68	first strand
Strand 2	I	158	172	anti-parallel
Strand 3	I	84	96	anti-parallel
Strand 4	I	134	141	anti-parallel
Strand 5	I	113	118	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	64	68	first strand
Strand 2	I	158	172	anti-parallel
Strand 3	I	84	96	anti-parallel
Strand 4	I	130	131	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	79	first strand
Strand 2	I	146	149	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	120	122	first strand
Strand 2	I	102	106	anti-parallel
Strand 3	I	151	156	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E7F

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E7F