Analysis of interatomic Contacts of Structural Units in PDB entry:
5E7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E7J entry

There is 1 chain in PDB entry 5E7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 133SER 584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5E7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
143 152Right-handed alpha
Helix 2
AA2
A
181 185Right-handed 310
Helix 3
AA3
A
188 198Right-handed alpha
Helix 4
AA4
A
204 216Right-handed alpha
Helix 5
AA5
A
229 246Right-handed alpha
Helix 6
AA6
A
248 253Right-handed alpha
Helix 7
AA7
A
275 290Right-handed alpha
Helix 8
AA8
A
305 315Right-handed alpha
Helix 9
AA9
A
323 333Right-handed alpha
Helix 10
AB1
A
348 355Right-handed alpha
Helix 11
AB2
A
357 367Right-handed alpha
Helix 12
AB3
A
386 397Right-handed alpha
Helix 13
AB4
A
423 425Right-handed 310
Helix 14
AB5
A
426 436Right-handed alpha
Helix 15
AB6
A
450 464Right-handed alpha
Helix 16
AB7
A
476 489Right-handed alpha
Helix 17
AB8
A
499 503Right-handed alpha
Helix 18
AB9
A
521 530Right-handed alpha
Helix 19
AC1
A
546 551Right-handed 310
Helix 20
AC2
A
552 563Right-handed alpha
Helix 21
AC3
A
568 576Right-handed alpha
Helix 22
AC4
A
577 581Right-handed 310
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There are 2 sheets in PDB entry 5E7J. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 171first strand
Strand 2
A
401 405anti-parallel
Strand 3
A
220 223parallel
Strand 4
A
377 381parallel
Strand 5
A
343 347parallel
Strand 6
A
269 272parallel
Strand 7
A
319 322parallel
Strand 8
A
297 300parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 421first strand
Strand 2
A
539 545parallel
Strand 3
A
512 515parallel
Strand 4
A
444 448parallel
Strand 5
A
494 498parallel
Strand 6
A
468 471parallel
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