Analysis of interatomic Contacts of Structural Units in PDB entry:
5E7M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E7M entry

There is 1 chain in PDB entry 5E7M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 134ALA 575
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5E7M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
143 151Right-handed alpha
Helix 2
AA2
A
188 198Right-handed alpha
Helix 3
AA3
A
204 216Right-handed alpha
Helix 4
AA4
A
229 246Right-handed alpha
Helix 5
AA5
A
248 253Right-handed alpha
Helix 6
AA6
A
275 291Right-handed alpha
Helix 7
AA7
A
305 314Right-handed alpha
Helix 8
AA8
A
323 333Right-handed alpha
Helix 9
AA9
A
348 355Right-handed alpha
Helix 10
AB1
A
357 366Right-handed alpha
Helix 11
AB2
A
386 397Right-handed alpha
Helix 12
AB3
A
423 437Right-handed alpha
Helix 13
AB4
A
450 464Right-handed alpha
Helix 14
AB5
A
476 478Right-handed 310
Helix 15
AB6
A
479 490Right-handed alpha
Helix 16
AB7
A
500 503Right-handed 310
Helix 17
AB8
A
521 530Right-handed alpha
Helix 18
AB9
A
546 551Right-handed 310
Helix 19
AC1
A
552 563Right-handed alpha
Helix 20
AC2
A
568 575Right-handed alpha
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There are 2 sheets in PDB entry 5E7M. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
401 404anti-parallel
Strand 3
A
220 223parallel
Strand 4
A
377 381parallel
Strand 5
A
343 346parallel
Strand 6
A
269 272parallel
Strand 7
A
319 322parallel
Strand 8
A
297 300parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 421first strand
Strand 2
A
539 545parallel
Strand 3
A
512 515parallel
Strand 4
A
444 448parallel
Strand 5
A
494 498parallel
Strand 6
A
468 471parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il