Analysis of interatomic Contacts of Structural Units in PDB entry:
5E7T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E7T entry

There are 6 chains in PDB entry 5E7T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 193	GLY 321
B	MET 1	LYS 286
G	ALA 2	ASN 173
H	MET 1	ASN 173
I	ALA 2	ASN 173
L	VAL 50	ASN 173

There are 14 helices in PDB entry 5E7T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	256	260	Right-handed 310
Helix 2	AA2	B	40	44	Right-handed 310
Helix 3	AA3	B	70	73	Right-handed 310
Helix 4	AA4	B	76	80	Right-handed 310
Helix 5	AA5	B	131	135	Right-handed 310
Helix 6	AA6	B	199	203	Right-handed 310
Helix 7	AA7	B	220	224	Right-handed 310
Helix 8	AA8	G	13	29	Right-handed alpha
Helix 9	AA9	G	58	63	Right-handed alpha
Helix 10	AB1	H	13	29	Right-handed alpha
Helix 11	AB2	H	58	63	Right-handed alpha
Helix 12	AB3	I	13	29	Right-handed alpha
Helix 13	AB4	I	58	63	Right-handed alpha
Helix 14	AB5	L	51	59	Right-handed alpha

There are 24 sheets in PDB entry 5E7T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	247	first strand
Strand 2	A	250	255	anti-parallel
Strand 3	A	196	202	anti-parallel
Strand 4	A	290	295	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	209	216	anti-parallel
Strand 3	A	279	286	anti-parallel
Strand 4	A	271	276	anti-parallel
Strand 5	A	264	267	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	307	first strand
Strand 2	A	314	317	anti-parallel
Strand 3	B	247	250	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	12	first strand
Strand 2	B	206	210	anti-parallel
Strand 3	B	225	228	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	50	first strand
Strand 2	B	53	60	anti-parallel
Strand 3	B	171	184	anti-parallel
Strand 4	B	85	98	anti-parallel
Strand 5	B	139	146	anti-parallel
Strand 6	L	113	117	anti-parallel
Strand 7	L	103	107	anti-parallel
Strand 8	L	146	151	anti-parallel
Strand 9	L	75	79	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	68	first strand
Strand 2	B	157	166	anti-parallel
Strand 3	B	104	114	anti-parallel
Strand 4	B	121	126	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	243	first strand
Strand 2	B	231	235	anti-parallel
Strand 3	B	258	265	anti-parallel
Strand 4	B	278	281	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	36	38	first strand
Strand 2	H	42	44	parallel
Strand 3	I	48	50	parallel
Strand 4	G	54	56	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	36	38	first strand
Strand 2	G	42	44	parallel
Strand 3	H	48	50	parallel
Strand 4	I	54	56	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	36	38	first strand
Strand 2	I	42	44	parallel
Strand 3	G	48	50	parallel
Strand 4	H	54	56	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	68	first strand
Strand 2	G	165	172	anti-parallel
Strand 3	G	84	91	anti-parallel
Strand 4	G	134	141	anti-parallel
Strand 5	G	113	118	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	79	first strand
Strand 2	G	146	149	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	130	131	first strand
Strand 2	G	93	96	anti-parallel
Strand 3	G	158	161	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	122	first strand
Strand 2	G	102	106	anti-parallel
Strand 3	G	151	156	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	64	68	first strand
Strand 2	H	165	172	anti-parallel
Strand 3	H	84	91	anti-parallel
Strand 4	H	134	141	anti-parallel
Strand 5	H	113	118	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	79	first strand
Strand 2	H	146	149	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	131	first strand
Strand 2	H	93	96	anti-parallel
Strand 3	H	158	161	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	122	first strand
Strand 2	H	102	106	anti-parallel
Strand 3	H	151	156	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	64	68	first strand
Strand 2	I	165	172	anti-parallel
Strand 3	I	84	91	anti-parallel
Strand 4	I	134	141	anti-parallel
Strand 5	I	113	118	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	79	first strand
Strand 2	I	146	149	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	130	131	first strand
Strand 2	I	93	96	anti-parallel
Strand 3	I	158	161	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	120	122	first strand
Strand 2	I	102	106	anti-parallel
Strand 3	I	151	156	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	64	68	first strand
Strand 2	L	165	172	anti-parallel
Strand 3	L	84	92	anti-parallel
Strand 4	L	95	96	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	64	68	first strand
Strand 2	L	165	172	anti-parallel
Strand 3	L	84	92	anti-parallel
Strand 4	L	136	141	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E7T

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E7T