Analysis of interatomic Contacts of Structural Units in PDB entry:
5E84

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E84 entry

There are 6 chains in PDB entry 5E84 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 24	LYS 629
B	SER 24	LYS 629
C	SER 24	LYS 629
D	SER 24	LYS 629
E	SER 24	LYS 629
F	SER 24	LYS 629

There are120 helices in PDB entry 5E84. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	77	83	Right-handed alpha
Helix 2	AA2	A	87	89	Right-handed 310
Helix 3	AA3	A	94	98	Right-handed 310
Helix 4	AA4	A	105	112	Right-handed alpha
Helix 5	AA5	A	113	115	Right-handed 310
Helix 6	AA6	A	141	162	Right-handed alpha
Helix 7	AA7	A	177	191	Right-handed alpha
Helix 8	AA8	A	201	211	Right-handed alpha
Helix 9	AA9	A	254	275	Right-handed alpha
Helix 10	AB1	A	281	299	Right-handed alpha
Helix 11	AB2	A	324	337	Right-handed alpha
Helix 12	AB3	A	338	349	Right-handed alpha
Helix 13	AB4	A	352	356	Right-handed 310
Helix 14	AB5	A	363	367	Right-handed 310
Helix 15	AB6	A	368	379	Right-handed alpha
Helix 16	AB7	A	392	406	Right-handed alpha
Helix 17	AB8	A	530	573	Right-handed alpha
Helix 18	AB9	A	583	602	Right-handed alpha
Helix 19	AC1	A	608	628	Right-handed alpha
Helix 20	AC2	B	77	83	Right-handed alpha
Helix 21	AC3	B	87	89	Right-handed 310
Helix 22	AC4	B	94	98	Right-handed 310
Helix 23	AC5	B	105	113	Right-handed alpha
Helix 24	AC6	B	141	162	Right-handed alpha
Helix 25	AC7	B	177	191	Right-handed alpha
Helix 26	AC8	B	201	211	Right-handed alpha
Helix 27	AC9	B	254	274	Right-handed alpha
Helix 28	AD1	B	277	280	Right-handed 310
Helix 29	AD2	B	281	299	Right-handed alpha
Helix 30	AD3	B	324	330	Right-handed alpha
Helix 31	AD4	B	331	337	Right-handed alpha
Helix 32	AD5	B	338	350	Right-handed alpha
Helix 33	AD6	B	352	356	Right-handed 310
Helix 34	AD7	B	363	367	Right-handed 310
Helix 35	AD8	B	368	379	Right-handed alpha
Helix 36	AD9	B	392	406	Right-handed alpha
Helix 37	AE1	B	468	472	Right-handed 310
Helix 38	AE2	B	530	573	Right-handed alpha
Helix 39	AE3	B	583	604	Right-handed alpha
Helix 40	AE4	B	608	628	Right-handed alpha
Helix 41	AE5	C	77	83	Right-handed alpha
Helix 42	AE6	C	84	89	Right-handed 310
Helix 43	AE7	C	94	98	Right-handed 310
Helix 44	AE8	C	105	113	Right-handed alpha
Helix 45	AE9	C	141	162	Right-handed alpha
Helix 46	AF1	C	177	191	Right-handed alpha
Helix 47	AF2	C	201	211	Right-handed alpha
Helix 48	AF3	C	254	275	Right-handed alpha
Helix 49	AF4	C	277	280	Right-handed 310
Helix 50	AF5	C	281	299	Right-handed alpha
Helix 51	AF6	C	324	331	Right-handed alpha
Helix 52	AF7	C	331	337	Right-handed alpha
Helix 53	AF8	C	338	350	Right-handed alpha
Helix 54	AF9	C	352	356	Right-handed 310
Helix 55	AG1	C	363	367	Right-handed 310
Helix 56	AG2	C	368	379	Right-handed alpha
Helix 57	AG3	C	392	406	Right-handed alpha
Helix 58	AG4	C	468	472	Right-handed 310
Helix 59	AG5	C	530	573	Right-handed alpha
Helix 60	AG6	C	583	602	Right-handed alpha
Helix 61	AG7	C	608	627	Right-handed alpha
Helix 62	AG8	D	77	83	Right-handed alpha
Helix 63	AG9	D	87	89	Right-handed 310
Helix 64	AH1	D	94	98	Right-handed 310
Helix 65	AH2	D	105	113	Right-handed alpha
Helix 66	AH3	D	141	162	Right-handed alpha
Helix 67	AH4	D	177	191	Right-handed alpha
Helix 68	AH5	D	201	211	Right-handed alpha
Helix 69	AH6	D	254	275	Right-handed alpha
Helix 70	AH7	D	277	280	Right-handed 310
Helix 71	AH8	D	281	299	Right-handed alpha
Helix 72	AH9	D	324	337	Right-handed alpha
Helix 73	AI1	D	338	350	Right-handed alpha
Helix 74	AI2	D	352	356	Right-handed 310
Helix 75	AI3	D	363	367	Right-handed 310
Helix 76	AI4	D	368	379	Right-handed alpha
Helix 77	AI5	D	392	407	Right-handed alpha
Helix 78	AI6	D	468	472	Right-handed 310
Helix 79	AI7	D	530	573	Right-handed alpha
Helix 80	AI8	D	583	604	Right-handed alpha
Helix 81	AI9	D	608	628	Right-handed alpha
Helix 82	AJ1	E	77	83	Right-handed alpha
Helix 83	AJ2	E	87	89	Right-handed 310
Helix 84	AJ3	E	105	113	Right-handed alpha
Helix 85	AJ4	E	141	162	Right-handed alpha
Helix 86	AJ5	E	177	191	Right-handed alpha
Helix 87	AJ6	E	201	211	Right-handed alpha
Helix 88	AJ7	E	254	274	Right-handed alpha
Helix 89	AJ8	E	277	280	Right-handed 310
Helix 90	AJ9	E	281	299	Right-handed alpha
Helix 91	AK1	E	324	338	Right-handed alpha
Helix 92	AK2	E	338	350	Right-handed alpha
Helix 93	AK3	E	352	356	Right-handed 310
Helix 94	AK4	E	363	367	Right-handed 310
Helix 95	AK5	E	368	379	Right-handed alpha
Helix 96	AK6	E	392	406	Right-handed alpha
Helix 97	AK7	E	468	472	Right-handed 310
Helix 98	AK8	E	530	574	Right-handed alpha
Helix 99	AK9	E	583	603	Right-handed alpha
Helix 100	AL1	E	608	628	Right-handed alpha
Helix 101	AL2	F	77	83	Right-handed alpha
Helix 102	AL3	F	87	89	Right-handed 310
Helix 103	AL4	F	94	98	Right-handed 310
Helix 104	AL5	F	105	113	Right-handed alpha
Helix 105	AL6	F	141	162	Right-handed alpha
Helix 106	AL7	F	177	191	Right-handed alpha
Helix 107	AL8	F	201	211	Right-handed alpha
Helix 108	AL9	F	254	275	Right-handed alpha
Helix 109	AM1	F	277	280	Right-handed 310
Helix 110	AM2	F	281	299	Right-handed alpha
Helix 111	AM3	F	324	338	Right-handed alpha
Helix 112	AM4	F	338	350	Right-handed alpha
Helix 113	AM5	F	352	356	Right-handed 310
Helix 114	AM6	F	363	367	Right-handed 310
Helix 115	AM7	F	368	379	Right-handed alpha
Helix 116	AM8	F	392	406	Right-handed alpha
Helix 117	AM9	F	468	472	Right-handed 310
Helix 118	AN1	F	530	573	Right-handed alpha
Helix 119	AN2	F	583	602	Right-handed alpha
Helix 120	AN3	F	608	628	Right-handed alpha

There are 48 sheets in PDB entry 5E84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	39	46	anti-parallel
Strand 3	A	62	63	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	39	46	anti-parallel
Strand 3	A	30	35	anti-parallel
Strand 4	A	167	172	parallel
Strand 5	A	194	200	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	76	first strand
Strand 2	A	66	68	anti-parallel
Strand 3	A	91	92	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	122	first strand
Strand 2	A	125	133	anti-parallel
Strand 3	A	136	140	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	362	first strand
Strand 2	A	217	225	parallel
Strand 3	A	230	238	anti-parallel
Strand 4	A	241	250	anti-parallel
Strand 5	A	415	419	parallel
Strand 6	A	442	443	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	313	first strand
Strand 2	A	316	323	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	432	437	first strand
Strand 2	A	424	428	anti-parallel
Strand 3	A	457	463	anti-parallel
Strand 4	A	473	480	anti-parallel
Strand 5	A	522	525	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	451	first strand
Strand 2	A	493	499	anti-parallel
Strand 3	A	505	511	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	39	46	anti-parallel
Strand 3	B	62	63	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	39	46	anti-parallel
Strand 3	B	30	35	anti-parallel
Strand 4	B	167	172	parallel
Strand 5	B	194	200	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	76	first strand
Strand 2	B	66	68	anti-parallel
Strand 3	B	91	92	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	122	first strand
Strand 2	B	125	133	anti-parallel
Strand 3	B	136	140	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	362	first strand
Strand 2	B	217	225	parallel
Strand 3	B	230	238	anti-parallel
Strand 4	B	241	250	anti-parallel
Strand 5	B	415	417	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	313	first strand
Strand 2	B	316	323	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	432	437	first strand
Strand 2	B	424	428	anti-parallel
Strand 3	B	457	463	anti-parallel
Strand 4	B	473	480	anti-parallel
Strand 5	B	522	525	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	451	first strand
Strand 2	B	493	499	anti-parallel
Strand 3	B	505	511	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	52	first strand
Strand 2	C	39	46	anti-parallel
Strand 3	C	62	63	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	52	first strand
Strand 2	C	39	46	anti-parallel
Strand 3	C	30	35	anti-parallel
Strand 4	C	167	172	parallel
Strand 5	C	194	200	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	76	first strand
Strand 2	C	66	68	anti-parallel
Strand 3	C	91	92	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	125	133	anti-parallel
Strand 3	C	136	140	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	362	first strand
Strand 2	C	218	225	parallel
Strand 3	C	230	238	anti-parallel
Strand 4	C	241	250	anti-parallel
Strand 5	C	415	417	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	313	first strand
Strand 2	C	316	323	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	432	437	first strand
Strand 2	C	424	428	anti-parallel
Strand 3	C	458	463	anti-parallel
Strand 4	C	473	480	anti-parallel
Strand 5	C	522	525	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	451	first strand
Strand 2	C	493	499	anti-parallel
Strand 3	C	505	508	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	52	first strand
Strand 2	D	39	46	anti-parallel
Strand 3	D	62	63	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	52	first strand
Strand 2	D	39	46	anti-parallel
Strand 3	D	30	35	anti-parallel
Strand 4	D	167	172	parallel
Strand 5	D	194	200	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	76	first strand
Strand 2	D	66	68	anti-parallel
Strand 3	D	91	92	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	122	first strand
Strand 2	D	125	133	anti-parallel
Strand 3	D	136	140	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	358	362	first strand
Strand 2	D	218	225	parallel
Strand 3	D	230	238	anti-parallel
Strand 4	D	241	250	anti-parallel
Strand 5	D	415	417	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	313	first strand
Strand 2	D	316	323	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	432	437	first strand
Strand 2	D	424	428	anti-parallel
Strand 3	D	457	463	anti-parallel
Strand 4	D	473	480	anti-parallel
Strand 5	D	522	525	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	451	first strand
Strand 2	D	493	499	anti-parallel
Strand 3	D	505	511	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	52	first strand
Strand 2	E	39	45	anti-parallel
Strand 3	E	62	63	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	52	first strand
Strand 2	E	39	45	anti-parallel
Strand 3	E	30	35	anti-parallel
Strand 4	E	167	172	parallel
Strand 5	E	194	200	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	76	first strand
Strand 2	E	66	68	anti-parallel
Strand 3	E	91	92	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	122	first strand
Strand 2	E	125	133	anti-parallel
Strand 3	E	136	140	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	358	362	first strand
Strand 2	E	218	225	parallel
Strand 3	E	230	238	anti-parallel
Strand 4	E	241	250	anti-parallel
Strand 5	E	415	417	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	313	first strand
Strand 2	E	316	323	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	432	437	first strand
Strand 2	E	424	428	anti-parallel
Strand 3	E	457	463	anti-parallel
Strand 4	E	473	481	anti-parallel
Strand 5	E	521	525	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	445	451	first strand
Strand 2	E	492	499	anti-parallel
Strand 3	E	505	512	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	52	first strand
Strand 2	F	39	46	anti-parallel
Strand 3	F	62	63	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	52	first strand
Strand 2	F	39	46	anti-parallel
Strand 3	F	30	35	anti-parallel
Strand 4	F	167	172	parallel
Strand 5	F	194	200	parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	76	first strand
Strand 2	F	66	68	anti-parallel
Strand 3	F	91	92	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	121	first strand
Strand 2	F	126	131	anti-parallel
Strand 3	F	137	140	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	358	362	first strand
Strand 2	F	218	225	parallel
Strand 3	F	230	238	anti-parallel
Strand 4	F	241	250	anti-parallel
Strand 5	F	415	417	parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	304	313	first strand
Strand 2	F	316	323	anti-parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	432	437	first strand
Strand 2	F	424	428	anti-parallel
Strand 3	F	457	463	anti-parallel
Strand 4	F	473	480	anti-parallel
Strand 5	F	522	525	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	445	451	first strand
Strand 2	F	493	499	anti-parallel
Strand 3	F	505	511	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E84

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E84