Analysis of interatomic Contacts of Structural Units in PDB entry:
5E8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E8C entry

There are 2 chains in PDB entry 5E8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 24ARG 270
B
 THR 4GLN 174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5E8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 38Right-handed alpha
Helix 2
AA2
A
38 49Right-handed alpha
Helix 3
AA3
A
66 68Right-handed 310
Helix 4
AA4
A
89 100Right-handed alpha
Helix 5
AA5
A
103 114Right-handed alpha
Helix 6
AA6
A
121 132Right-handed alpha
Helix 7
AA7
A
134 143Right-handed alpha
Helix 8
AA8
A
145 157Right-handed alpha
Helix 9
AA9
A
190 201Right-handed alpha
Helix 10
AB1
A
235 246Right-handed alpha
Helix 11
AB2
A
249 263Right-handed alpha
Helix 12
AB3
B
5 13Right-handed alpha
Helix 13
AB4
B
51 63Right-handed alpha
Helix 14
AB5
B
116 126Right-handed alpha
Helix 15
AB6
B
159 173Right-handed alpha
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There are 5 sheets in PDB entry 5E8C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
B
147 156anti-parallel
Strand 3
B
136 144anti-parallel
Strand 4
B
49 50anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
B
147 156anti-parallel
Strand 3
B
103 106anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
80 85anti-parallel
Strand 3
A
72 77anti-parallel
Strand 4
A
187 189anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
204 211anti-parallel
Strand 3
A
214 221anti-parallel
Strand 4
A
176 181anti-parallel
Strand 5
A
163 168anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 20first strand
Strand 2
B
39 43anti-parallel
Strand 3
B
79 85anti-parallel
Strand 4
B
70 75anti-parallel
Strand 5
B
111 115anti-parallel
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