Analysis of interatomic Contacts of Structural Units in PDB entry:
5E8E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E8E entry

There are 4 chains in PDB entry 5E8E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	CYS 215
B	VAL 2	PRO 229
H	ILE 321	GLU 579
L	THR 285	ILE 317

There are 16 helices in PDB entry 5E8E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	79	83	Right-handed 310
Helix 2	AA2	A	122	129	Right-handed alpha
Helix 3	AA3	A	184	189	Right-handed alpha
Helix 4	AA4	B	28	32	Right-handed 310
Helix 5	AA5	B	62	65	Right-handed 310
Helix 6	AA6	B	87	91	Right-handed 310
Helix 7	AA7	B	200	202	Right-handed 310
Helix 8	AA8	H	361	364	Right-handed 310
Helix 9	AA9	H	368	371	Right-handed 310
Helix 10	AB1	H	375	377	Right-handed 310
Helix 11	AB2	H	442	450	Right-handed alpha
Helix 12	AB3	H	489	496	Right-handed alpha
Helix 13	AB4	H	511	515	Right-handed 310
Helix 14	AB5	H	566	575	Right-handed alpha
Helix 15	AB6	L	299	303	Right-handed 310
Helix 16	AB7	L	308	316	Right-handed alpha

There are 14 sheets in PDB entry 5E8E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	70	76	anti-parallel
Strand 4	A	62	67	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	103	107	parallel
Strand 3	A	85	90	anti-parallel
Strand 4	A	33	38	anti-parallel
Strand 5	A	45	49	anti-parallel
Strand 6	A	53	54	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	103	107	parallel
Strand 3	A	85	90	anti-parallel
Strand 4	A	98	99	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	119	first strand
Strand 2	A	130	140	anti-parallel
Strand 3	A	174	183	anti-parallel
Strand 4	A	160	164	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	146	151	anti-parallel
Strand 3	A	192	198	anti-parallel
Strand 4	A	206	211	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	119	123	parallel
Strand 3	B	92	98	anti-parallel
Strand 4	B	35	39	anti-parallel
Strand 5	B	45	52	anti-parallel
Strand 6	B	57	60	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	119	123	parallel
Strand 3	B	92	98	anti-parallel
Strand 4	B	114	115	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	137	first strand
Strand 2	B	146	156	anti-parallel
Strand 3	B	189	198	anti-parallel
Strand 4	B	174	177	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	137	first strand
Strand 2	B	146	156	anti-parallel
Strand 3	B	189	198	anti-parallel
Strand 4	B	181	182	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	166	first strand
Strand 2	B	207	214	anti-parallel
Strand 3	B	220	225	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	325	326	first strand
Strand 2	H	481	486	anti-parallel
Strand 3	H	455	460	anti-parallel
Strand 4	H	528	532	anti-parallel
Strand 5	H	539	547	anti-parallel
Strand 6	H	558	562	anti-parallel
Strand 7	H	505	508	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	397	399	first strand
Strand 2	H	379	383	anti-parallel
Strand 3	H	335	340	anti-parallel
Strand 4	H	345	352	anti-parallel
Strand 5	H	357	360	anti-parallel
Strand 6	H	421	425	anti-parallel
Strand 7	H	401	406	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	366	367	first strand
Strand 2	H	372	373	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E8E

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E8E