Analysis of interatomic Contacts of Structural Units in PDB entry:
5E8G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E8G entry

There are 4 chains in PDB entry 5E8G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 279PRO 371
B
 GLY 279PRO 371
C
 GLY 279PRO 371
D
 GLY 279PRO 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5E8G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
282 292Right-handed alpha
Helix 2
AA2
A
293 297Right-handed 310
Helix 3
AA3
A
313 325Right-handed alpha
Helix 4
AA4
A
331 345Right-handed alpha
Helix 5
AA5
A
361 369Right-handed alpha
Helix 6
AA6
B
282 292Right-handed alpha
Helix 7
AA7
B
293 297Right-handed 310
Helix 8
AA8
B
313 325Right-handed alpha
Helix 9
AA9
B
331 345Right-handed alpha
Helix 10
AB1
B
361 369Right-handed alpha
Helix 11
AB2
C
282 292Right-handed alpha
Helix 12
AB3
C
293 297Right-handed 310
Helix 13
AB4
C
313 325Right-handed alpha
Helix 14
AB5
C
331 345Right-handed alpha
Helix 15
AB6
C
361 369Right-handed alpha
Helix 16
AB7
D
282 293Right-handed alpha
Helix 17
AB8
D
294 297Right-handed 310
Helix 18
AB9
D
313 325Right-handed alpha
Helix 19
AC1
D
331 345Right-handed alpha
Helix 20
AC2
D
361 369Right-handed alpha
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There are 4 sheets in PDB entry 5E8G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 302first strand
Strand 2
A
308 310anti-parallel
Strand 3
A
357 360anti-parallel
Strand 4
A
348 350anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 302first strand
Strand 2
B
308 310anti-parallel
Strand 3
B
357 360anti-parallel
Strand 4
B
348 350anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
301 302first strand
Strand 2
C
308 310anti-parallel
Strand 3
C
357 360anti-parallel
Strand 4
C
348 350anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
301 302first strand
Strand 2
D
308 310anti-parallel
Strand 3
D
357 360anti-parallel
Strand 4
D
348 350anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il