Analysis of interatomic Contacts of Structural Units in PDB entry:
5E8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E8J entry

There are 4 chains in PDB entry 5E8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 167GLN 476
B
 SER 167GLN 476
C
 ASP 3ASN 44
D
 ASP 3SER 45
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5E8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
169 195Right-handed alpha
Helix 2
AA2
A
211 218Right-handed alpha
Helix 3
AA3
A
229 245Right-handed alpha
Helix 4
AA4
A
266 270Right-handed 310
Helix 5
AA5
A
286 292Right-handed 310
Helix 6
AA6
A
293 306Right-handed alpha
Helix 7
AA7
A
320 331Right-handed alpha
Helix 8
AA8
A
374 383Right-handed alpha
Helix 9
AA9
A
395 403Right-handed alpha
Helix 10
AB1
A
405 415Right-handed alpha
Helix 11
AB2
A
437 444Right-handed alpha
Helix 12
AB3
A
457 465Right-handed alpha
Helix 13
AB4
B
169 195Right-handed alpha
Helix 14
AB5
B
211 218Right-handed alpha
Helix 15
AB6
B
229 245Right-handed alpha
Helix 16
AB7
B
266 270Right-handed 310
Helix 17
AB8
B
286 292Right-handed 310
Helix 18
AB9
B
293 306Right-handed alpha
Helix 19
AC1
B
320 331Right-handed alpha
Helix 20
AC2
B
374 383Right-handed alpha
Helix 21
AC3
B
395 403Right-handed alpha
Helix 22
AC4
B
405 415Right-handed alpha
Helix 23
AC5
B
437 444Right-handed alpha
Helix 24
AC6
B
457 465Right-handed alpha
Helix 25
AC7
C
4 15Right-handed alpha
Helix 26
AC8
C
23 31Right-handed alpha
Helix 27
AC9
D
4 15Right-handed alpha
Helix 28
AD1
D
23 31Right-handed alpha
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There are 8 sheets in PDB entry 5E8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 259first strand
Strand 2
A
222 227parallel
Strand 3
A
200 204parallel
Strand 4
A
278 284parallel
Strand 5
A
308 319parallel
Strand 6
A
467 474anti-parallel
Strand 7
A
387 394anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
341 345anti-parallel
Strand 3
A
357 362anti-parallel
Strand 4
A
366 367anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
341 345anti-parallel
Strand 3
A
357 362anti-parallel
Strand 4
A
370 371anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 421first strand
Strand 2
A
453 455anti-parallel
Strand 3
C
39 40anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 259first strand
Strand 2
B
222 227parallel
Strand 3
B
200 204parallel
Strand 4
B
278 284parallel
Strand 5
B
308 319parallel
Strand 6
B
467 474anti-parallel
Strand 7
B
387 394anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 337first strand
Strand 2
B
341 345anti-parallel
Strand 3
B
357 362anti-parallel
Strand 4
B
366 367anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 337first strand
Strand 2
B
341 345anti-parallel
Strand 3
B
357 362anti-parallel
Strand 4
B
370 371anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
419 421first strand
Strand 2
B
453 455anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il