Analysis of interatomic Contacts of Structural Units in PDB entry:
5E8K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E8K entry

There are 2 chains in PDB entry 5E8K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 7ARG 303
B
 PHE 9ARG 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5E8K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 30Right-handed alpha
Helix 2
AA2
A
36 48Right-handed alpha
Helix 3
AA3
A
53 66Right-handed alpha
Helix 4
AA4
A
69 72Right-handed 310
Helix 5
AA5
A
73 93Right-handed alpha
Helix 6
AA6
A
108 111Right-handed 310
Helix 7
AA7
A
112 134Right-handed alpha
Helix 8
AA8
A
142 166Right-handed alpha
Helix 9
AA9
A
182 207Right-handed alpha
Helix 10
AB1
A
209 234Right-handed alpha
Helix 11
AB2
A
257 263Right-handed alpha
Helix 12
AB3
A
263 281Right-handed alpha
Helix 13
AB4
A
290 302Right-handed alpha
Helix 14
AB5
B
11 30Right-handed alpha
Helix 15
AB6
B
37 48Right-handed alpha
Helix 16
AB7
B
53 66Right-handed alpha
Helix 17
AB8
B
69 72Right-handed 310
Helix 18
AB9
B
73 92Right-handed alpha
Helix 19
AC1
B
107 113Right-handed alpha
Helix 20
AC2
B
113 134Right-handed alpha
Helix 21
AC3
B
141 162Right-handed alpha
Helix 22
AC4
B
192 206Right-handed alpha
Helix 23
AC5
B
209 234Right-handed alpha
Helix 24
AC6
B
263 282Right-handed alpha
Helix 25
AC7
B
290 302Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5E8K.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
105 106anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il