Analysis of interatomic Contacts of Structural Units in PDB entry:
5E8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E8L entry

There are 2 chains in PDB entry 5E8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9GLN 306
B
 SER 10GLN 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5E8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 31Right-handed alpha
Helix 2
AA2
A
36 48Right-handed alpha
Helix 3
AA3
A
53 66Right-handed alpha
Helix 4
AA4
A
73 92Right-handed alpha
Helix 5
AA5
A
107 113Right-handed alpha
Helix 6
AA6
A
113 136Right-handed alpha
Helix 7
AA7
A
142 158Right-handed alpha
Helix 8
AA8
A
161 169Right-handed alpha
Helix 9
AA9
A
181 193Right-handed alpha
Helix 10
AB1
A
193 208Right-handed alpha
Helix 11
AB2
A
211 238Right-handed alpha
Helix 12
AB3
A
259 265Right-handed alpha
Helix 13
AB4
A
265 283Right-handed alpha
Helix 14
AB5
A
292 305Right-handed alpha
Helix 15
AB6
B
12 32Right-handed alpha
Helix 16
AB7
B
37 49Right-handed alpha
Helix 17
AB8
B
54 67Right-handed alpha
Helix 18
AB9
B
74 94Right-handed alpha
Helix 19
AC1
B
108 113Right-handed alpha
Helix 20
AC2
B
114 137Right-handed alpha
Helix 21
AC3
B
143 159Right-handed alpha
Helix 22
AC4
B
162 172Right-handed alpha
Helix 23
AC5
B
182 194Right-handed alpha
Helix 24
AC6
B
194 209Right-handed alpha
Helix 25
AC7
B
212 239Right-handed alpha
Helix 26
AC8
B
260 265Right-handed alpha
Helix 27
AC9
B
267 284Right-handed alpha
Helix 28
AD1
B
293 305Right-handed alpha
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There are 2 sheets in PDB entry 5E8L. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
105 106anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
B
106 107anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il