Analysis of interatomic Contacts of Structural Units in PDB entry:
5E8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E8M entry

There are 2 chains in PDB entry 5E8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 159ILE 543
B
 GLN 1GLU 74
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5E8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
166 180Right-handed alpha
Helix 2
AA2
A
201 214Right-handed alpha
Helix 3
AA3
A
225 227Right-handed 310
Helix 4
AA4
A
228 234Right-handed alpha
Helix 5
AA5
A
238 255Right-handed alpha
Helix 6
AA6
A
272 287Right-handed alpha
Helix 7
AA7
A
288 290Right-handed 310
Helix 8
AA8
A
306 311Right-handed alpha
Helix 9
AA9
A
312 317Right-handed alpha
Helix 10
AB1
A
317 332Right-handed alpha
Helix 11
AB2
A
358 360Right-handed 310
Helix 12
AB3
A
361 376Right-handed alpha
Helix 13
AB4
A
401 413Right-handed alpha
Helix 14
AB5
A
486 490Right-handed 310
Helix 15
AB6
A
539 543Right-handed 310
Helix 16
AB7
B
29 33Right-handed 310
Helix 17
AB8
B
35 41Right-handed alpha
Helix 18
AB9
B
42 52Right-handed alpha
Helix 19
AC1
B
61 65Right-handed 310
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There are 5 sheets in PDB entry 5E8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
B
67 69parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 188first strand
Strand 2
A
219 222parallel
Strand 3
A
263 268parallel
Strand 4
A
292 301parallel
Strand 5
A
338 348parallel
Strand 6
A
379 382parallel
Strand 7
B
22 27parallel
Strand 8
B
55 60parallel
Strand 9
A
182 188parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 499first strand
Strand 2
A
493 495anti-parallel
Strand 3
A
475 482anti-parallel
Strand 4
A
514 515anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 499first strand
Strand 2
A
493 495anti-parallel
Strand 3
A
475 482anti-parallel
Strand 4
A
528 534anti-parallel
Strand 5
A
450 456anti-parallel
Strand 6
A
431 438anti-parallel
Strand 7
A
414 418anti-parallel
Strand 8
B
15 16anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 423first strand
Strand 2
B
3 9anti-parallel
Strand 3
A
462 465parallel
Strand 4
A
522 524anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il