Analysis of interatomic Contacts of Structural Units in PDB entry:
5E8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E8R entry

There are 2 chains in PDB entry 5E8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 42ASP 375
B
 LYS 40GLU 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5E8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 50Right-handed alpha
Helix 2
AA2
A
53 63Right-handed alpha
Helix 3
AA3
A
63 77Right-handed alpha
Helix 4
AA4
A
77 82Right-handed alpha
Helix 5
AA5
A
94 103Right-handed alpha
Helix 6
AA6
A
116 127Right-handed alpha
Helix 7
AA7
A
166 177Right-handed alpha
Helix 8
AA8
A
198 216Right-handed alpha
Helix 9
AA9
A
219 221Right-handed 310
Helix 10
AB1
A
222 233Right-handed alpha
Helix 11
AB2
A
242 246Right-handed 310
Helix 12
AB3
A
262 270Right-handed alpha
Helix 13
AB4
B
42 52Right-handed alpha
Helix 14
AB5
B
53 63Right-handed alpha
Helix 15
AB6
B
63 77Right-handed alpha
Helix 16
AB7
B
77 82Right-handed alpha
Helix 17
AB8
B
94 103Right-handed alpha
Helix 18
AB9
B
116 127Right-handed alpha
Helix 19
AC1
B
166 177Right-handed alpha
Helix 20
AC2
B
198 207Right-handed alpha
Helix 21
AC3
B
210 216Right-handed alpha
Helix 22
AC4
B
219 221Right-handed 310
Helix 23
AC5
B
222 231Right-handed alpha
Helix 24
AC6
B
242 246Right-handed 310
Helix 25
AC7
B
262 270Right-handed alpha
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There are 6 sheets in PDB entry 5E8R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
107 112parallel
Strand 3
A
85 89parallel
Strand 4
A
149 153parallel
Strand 5
A
178 185parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 257first strand
Strand 2
A
188 196anti-parallel
Strand 3
A
283 296anti-parallel
Strand 4
A
320 331anti-parallel
Strand 5
A
235 239anti-parallel
Strand 6
A
367 373parallel
Strand 7
A
353 361anti-parallel
Strand 8
A
336 345anti-parallel
Strand 9
A
271 278anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 257first strand
Strand 2
A
188 196anti-parallel
Strand 3
A
283 296anti-parallel
Strand 4
A
305 308anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 137first strand
Strand 2
B
107 112parallel
Strand 3
B
85 89parallel
Strand 4
B
149 153parallel
Strand 5
B
178 185parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 257first strand
Strand 2
B
188 196anti-parallel
Strand 3
B
283 296anti-parallel
Strand 4
B
320 331anti-parallel
Strand 5
B
235 239anti-parallel
Strand 6
B
367 373parallel
Strand 7
B
353 361anti-parallel
Strand 8
B
336 345anti-parallel
Strand 9
B
271 278anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 257first strand
Strand 2
B
188 196anti-parallel
Strand 3
B
283 296anti-parallel
Strand 4
B
305 308anti-parallel
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