Analysis of interatomic Contacts of Structural Units in PDB entry:
5E8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E8Y entry

There is 1 chain in PDB entry 5E8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 240LEU 541
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5E8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
283 296Right-handed alpha
Helix 2
AA2
A
297 300Right-handed 310
Helix 3
AA3
A
332 340Right-handed alpha
Helix 4
AA4
A
343 363Right-handed alpha
Helix 5
AA5
A
381 383Right-handed 310
Helix 6
AA6
A
409 416Right-handed alpha
Helix 7
AA7
A
421 425Right-handed 310
Helix 8
AA8
A
426 431Right-handed alpha
Helix 9
AA9
A
440 459Right-handed alpha
Helix 10
AB1
A
460 465Right-handed 310
Helix 11
AB2
A
483 492Right-handed alpha
Helix 12
AB3
A
501 506Right-handed 310
Helix 13
AB4
A
507 521Right-handed alpha
Helix 14
AB5
A
524 528Right-handed 310
Helix 15
AB6
A
530 541Right-handed alpha
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There are 3 sheets in PDB entry 5E8Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 252first strand
Strand 2
A
257 263anti-parallel
Strand 3
A
272 280anti-parallel
Strand 4
A
319 326anti-parallel
Strand 5
A
307 314anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 376first strand
Strand 2
A
402 403anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 387first strand
Strand 2
A
393 395anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il